Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4lisUPGUDP-glucose 4-epimerase (Eurofung)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4lisUPGUDP-glucose 4-epimerase (Eurofung)/1.000
1i3kUPGUDP-glucose 4-epimerase/0.504
1lrkUD1UDP-glucose 4-epimerase5.1.3.20.479
4zrnUPGUDP-glucose 4-epimerase, putative/0.476
1ek6UPGUDP-glucose 4-epimerase/0.472
1udcUFMUDP-glucose 4-epimerase5.1.3.20.465
2udpUPPUDP-glucose 4-epimerase5.1.3.20.461
4kweGDPCell division protein FtsZ/0.451
1w5bGTPCell division protein FtsZ 1/0.447
1rq1FADEndoplasmic oxidoreductin-11.8.40.442