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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4kq21S3Glycogen [starch] synthase isoform 22.4.1.11

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4kq21S3Glycogen [starch] synthase isoform 22.4.1.111.000
4k6rATPBifunctional protein GlmU/0.476
3zc3NAPFerredoxin--NADP reductase1.18.1.20.464
4oi2ADPProtein clpf-1/0.462
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.458
4zrnUPGUDP-glucose 4-epimerase, putative/0.455
1a8pFADFerredoxin--NADP reductase/0.454
1lrlUPGUDP-glucose 4-epimerase5.1.3.20.450
3cx4ADPGlycogen synthase2.4.1.210.450
3ruhUD6UDP-N-acetylglucosamine 4-epimerase/0.449
3mw9NAIGlutamate dehydrogenase 1, mitochondrial1.4.1.30.448
3to3ATPPetrobactin biosynthesis protein AsbB/0.447
2x0rNADMalate dehydrogenase/0.446
3nt6COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.444
3rucUD2UDP-N-acetylglucosamine 4-epimerase/0.444
4d04NAPPhenylacetone monooxygenase1.14.13.920.444
3ub5ATPActin, cytoplasmic 1/0.443
4b4dFADFerredoxin-NADP reductase/0.443
3kjiADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC/0.442
1z0sATPNAD kinase/0.441
2x60GTPMannose-1-phosphate guanylyltransferase/0.441
4loh1SYStimulator of interferon genes protein/0.441
1ixeCOACitrate synthase/0.440
3ta0ATPNitrogen regulatory protein P-II (GlnB-3)/0.440