1.980 Å
X-ray
2013-04-16
Name: | Bifunctional protein GlmU |
---|---|
ID: | GLMU_MYCTU |
AC: | P9WMN3 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 23.361 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 4 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG MG MG |
Ligandability | Volume (Å3) |
---|---|
0.338 | 1103.625 |
% Hydrophobic | % Polar |
---|---|
34.25 | 65.75 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 65.52 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
1.87232 | 32.5725 | -13.0124 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2' | CB | ALA- 14 | 3.96 | 0 | Hydrophobic |
O1B | N | GLY- 17 | 2.89 | 140.37 | H-Bond (Protein Donor) |
O1G | N | THR- 18 | 2.74 | 157.91 | H-Bond (Protein Donor) |
O1G | OG1 | THR- 18 | 3.38 | 141.43 | H-Bond (Protein Donor) |
O2G | CZ | ARG- 19 | 3.66 | 0 | Ionic (Protein Cationic) |
O2G | NE | ARG- 19 | 2.81 | 171.7 | H-Bond (Protein Donor) |
O2G | N | ARG- 19 | 2.96 | 165.93 | H-Bond (Protein Donor) |
O3B | NH2 | ARG- 19 | 3.14 | 149.42 | H-Bond (Protein Donor) |
O2' | NE2 | GLN- 83 | 2.59 | 133.12 | H-Bond (Protein Donor) |
O4' | N | GLY- 88 | 2.83 | 133.14 | H-Bond (Protein Donor) |
O2A | MG | MG- 502 | 1.91 | 0 | Metal Acceptor |
O1A | MG | MG- 503 | 1.9 | 0 | Metal Acceptor |