1.980 Å
X-ray
2013-04-16
| Name: | Bifunctional protein GlmU |
|---|---|
| ID: | GLMU_MYCTU |
| AC: | P9WMN3 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 23.361 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 4 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.338 | 1103.625 |
| % Hydrophobic | % Polar |
|---|---|
| 34.25 | 65.75 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 65.52 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 1.87232 | 32.5725 | -13.0124 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2' | CB | ALA- 14 | 3.96 | 0 | Hydrophobic |
| O1B | N | GLY- 17 | 2.89 | 140.37 | H-Bond (Protein Donor) |
| O1G | N | THR- 18 | 2.74 | 157.91 | H-Bond (Protein Donor) |
| O1G | OG1 | THR- 18 | 3.38 | 141.43 | H-Bond (Protein Donor) |
| O2G | CZ | ARG- 19 | 3.66 | 0 | Ionic (Protein Cationic) |
| O2G | NE | ARG- 19 | 2.81 | 171.7 | H-Bond (Protein Donor) |
| O2G | N | ARG- 19 | 2.96 | 165.93 | H-Bond (Protein Donor) |
| O3B | NH2 | ARG- 19 | 3.14 | 149.42 | H-Bond (Protein Donor) |
| O2' | NE2 | GLN- 83 | 2.59 | 133.12 | H-Bond (Protein Donor) |
| O4' | N | GLY- 88 | 2.83 | 133.14 | H-Bond (Protein Donor) |
| O2A | MG | MG- 502 | 1.91 | 0 | Metal Acceptor |
| O1A | MG | MG- 503 | 1.9 | 0 | Metal Acceptor |