2.400 Å
X-ray
2010-05-05
| Name: | Glutamate dehydrogenase 1, mitochondrial |
|---|---|
| ID: | DHE3_BOVIN |
| AC: | P00366 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | 1.4.1.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 45 % |
| C | 55 % |
| B-Factor: | 48.821 |
|---|---|
| Number of residues: | 44 |
| Including | |
| Standard Amino Acids: | 42 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.059 | 1329.750 |
| % Hydrophobic | % Polar |
|---|---|
| 35.03 | 64.97 |
| According to VolSite | |

| HET Code: | NAI |
|---|---|
| Formula: | C21H27N7O14P2 |
| Molecular weight: | 663.425 g/mol |
| DrugBank ID: | DB00157 |
| Buried Surface Area: | 60.64 % |
| Polar Surface area: | 342.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 19 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 25.8915 | 28.0335 | 31.81 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6N | CD | ARG- 86 | 4.1 | 0 | Hydrophobic |
| C4N | CG | ARG- 86 | 3.96 | 0 | Hydrophobic |
| C5N | CB | PRO- 121 | 3.2 | 0 | Hydrophobic |
| C6N | CG | PRO- 121 | 3.91 | 0 | Hydrophobic |
| C5B | CG2 | ILE- 203 | 3.98 | 0 | Hydrophobic |
| O3D | N | HIS- 391 | 3.13 | 131.17 | H-Bond (Protein Donor) |
| C5D | CB | SER- 393 | 4.36 | 0 | Hydrophobic |
| N1A | O | HOH- 726 | 3.18 | 170.27 | H-Bond (Ligand Donor) |