scPDB - Distribution of Binding site Similarity values of 4gde entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4gde	FDA	UDP-galactopyranose mutase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4gde	FDA	UDP-galactopyranose mutase	/	1.000
4u8m	FDA	UDP-galactopyranose mutase	/	0.678
4u8l	FDA	UDP-galactopyranose mutase	/	0.664
4u8o	FDA	UDP-galactopyranose mutase	/	0.662
3uth	FDA	UDP-galactopyranose mutase	/	0.654
4u8k	FDA	UDP-galactopyranose mutase	/	0.654
3utg	FDA	UDP-galactopyranose mutase	/	0.653
4u8p	FDA	UDP-galactopyranose mutase	/	0.653
3utf	FDA	UDP-galactopyranose mutase	/	0.624
4wx1	FDA	UDP-galactopyranose mutase	/	0.618
3ukl	FAD	UDP-galactopyranose mutase	/	0.617
3ukk	FDA	UDP-galactopyranose mutase	/	0.605
4u8j	FDA	UDP-galactopyranose mutase	/	0.603
3ukk	FAD	UDP-galactopyranose mutase	/	0.600
5hhf	FDA	UDP-galactopyranose mutase	/	0.588
4u8n	FDA	UDP-galactopyranose mutase	/	0.584
3ukf	FDA	UDP-galactopyranose mutase	/	0.570
3ute	FAD	UDP-galactopyranose mutase	/	0.547
3uka	FAD	UDP-galactopyranose mutase	/	0.544
4gdd	FAD	UDP-galactopyranose mutase	/	0.537
4gdc	FAD	UDP-galactopyranose mutase	/	0.528
4dsh	FDA	Uncharacterized protein	/	0.522
4dsg	FAD	Uncharacterized protein	/	0.505