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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4a4l939Serine/threonine-protein kinase PLK12.7.11.21

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4a4l939Serine/threonine-protein kinase PLK12.7.11.211.000
2yac937Serine/threonine-protein kinase PLK12.7.11.210.616
2rkuR78Serine/threonine-protein kinase PLK12.7.11.210.572
2owb626Serine/threonine-protein kinase PLK12.7.11.210.543
4b6l9ZPSerine/threonine-protein kinase PLK32.7.11.210.540
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.533
4j521J3Serine/threonine-protein kinase PLK12.7.11.210.520
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.520
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.508
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.485
2in6839Wee1-like protein kinase2.7.10.20.481
2xkeWI2Serine/threonine-protein kinase Nek22.7.11.10.470
3bi6396Wee1-like protein kinase2.7.10.20.464
3d5wADPSerine/threonine-protein kinase PLK/0.446
4luxQJ8Nitric oxide synthase, brain1.14.13.390.445
2z2w770Wee1-like protein kinase2.7.10.20.440
3cr0809Wee1-like protein kinase2.7.10.20.440