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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3w9rA8SAbscisic acid receptor PYL9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3w9rA8SAbscisic acid receptor PYL9/1.000
3oquA8SAbscisic acid receptor PYL9/0.619
3njoP2MAbscisic acid receptor PYR1/0.506
4lgaA2OAbscisic acid receptor PYL2/0.482
3zvuA8SAbscisic acid receptor PYR1/0.478
3kb3A8SAbscisic acid receptor PYL2/0.476
3kdiA8SAbscisic acid receptor PYL2/0.476
3r6pA8SAbscisic acid receptor PYL10/0.472
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.469
1phgMYTCamphor 5-monooxygenase1.14.15.10.467
4la7A1OAbscisic acid receptor PYL2/0.466
2xszATPRuvB-like 23.6.4.120.465
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.465
3vrwYS5Vitamin D3 receptor/0.463
3k90A8SAbscisic acid receptor PYR1/0.460
2rkvZBATrichothecene 3-O-acetyltransferase/0.458
1dz4CAMCamphor 5-monooxygenase1.14.15.10.457
3ujlA8SAbscisic acid receptor PYL2/0.456
3nj0PYVAbscisic acid receptor PYL2/0.455
3njoPYVAbscisic acid receptor PYR1/0.455
4dscA8SAbscisic acid receptor PYL3/0.455
3nmnPYVAbscisic acid receptor PYL1/0.454
4oicA8SBet v I allergen-like/0.453
4ds8A8SAbscisic acid receptor PYL3/0.451
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
3nmpPYVAbscisic acid receptor PYL2/0.450
4jdaA9SAbscisic acid receptor PYL3/0.450
4lg5A1OAbscisic acid receptor PYL2/0.448
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
2cdz23DSerine/threonine-protein kinase PAK 42.7.11.10.445
3a783EVVitamin D3 receptor/0.444
4mv4ACPBiotin carboxylase6.3.4.140.444
1nooCAHCamphor 5-monooxygenase1.14.15.10.443
4dsbA8SAbscisic acid receptor PYL3/0.443
1u7tNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.442
3w0jT08Vitamin D3 receptor/0.442
2zaxCAMCamphor 5-monooxygenase1.14.15.10.441
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3wrmCAMCamphor 5-monooxygenase1.14.15.10.441
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440