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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3utfFDAUDP-galactopyranose mutase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3utfFDAUDP-galactopyranose mutase/1.000
4u8jFDAUDP-galactopyranose mutase/0.821
4u8pFDAUDP-galactopyranose mutase/0.769
4u8lFDAUDP-galactopyranose mutase/0.716
3utgFDAUDP-galactopyranose mutase/0.636
4u8kFDAUDP-galactopyranose mutase/0.631
3uthFDAUDP-galactopyranose mutase/0.612
3uklFADUDP-galactopyranose mutase/0.600
4u8nFDAUDP-galactopyranose mutase/0.593
4wx1FDAUDP-galactopyranose mutase/0.592
3ukkFDAUDP-galactopyranose mutase/0.578
4u8oFDAUDP-galactopyranose mutase/0.577
4gdeFDAUDP-galactopyranose mutase/0.575
5hhfFDAUDP-galactopyranose mutase/0.574
3ukkFADUDP-galactopyranose mutase/0.549
4u8mFDAUDP-galactopyranose mutase/0.548
3ukaFADUDP-galactopyranose mutase/0.518
3ukfFDAUDP-galactopyranose mutase/0.513
4gddFADUDP-galactopyranose mutase/0.500
4gdcFADUDP-galactopyranose mutase/0.489
4u8iFDAUDP-galactopyranose mutase/0.478
4dsgFADUncharacterized protein/0.476
4dshFDAUncharacterized protein/0.464
3uteFADUDP-galactopyranose mutase/0.451