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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ukoNADAlcohol dehydrogenase class-3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ukoNADAlcohol dehydrogenase class-3/1.000
4jjiNADAlcohol dehydrogenase class-3/0.559
4gl4NAIAlcohol dehydrogenase class-3/0.547
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.538
1ma0NADAlcohol dehydrogenase class-31.1.1.10.532
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.511
1mp0NADAlcohol dehydrogenase class-31.1.1.10.496
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.489
1cdoNADAlcohol dehydrogenase 11.1.1.10.475
1tehNADAlcohol dehydrogenase class-31.1.1.10.447
4c4oNADSADH/0.447