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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3rbaCODPhosphopantetheine adenylyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3rbaCODPhosphopantetheine adenylyltransferase/1.000
3nd6ATPPhosphopantetheine adenylyltransferase/0.501
4nauAGSPhosphopantetheine adenylyltransferase/0.494
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.484
5kwvANPPantothenate synthetase/0.474
3isjA8DPantothenate synthetase6.3.2.10.473
1n2hPAJPantothenate synthetase6.3.2.10.468
3fr5I4AFatty acid-binding protein, adipocyte/0.463
1n2iPAJPantothenate synthetase6.3.2.10.458
2bn4FMNNADPH--cytochrome P450 reductase/0.458
2pidYSATyrosine--tRNA ligase, mitochondrial6.1.1.10.458
3coy53HPantothenate synthetase6.3.2.10.456
2bf4FMNNADPH--cytochrome P450 reductase/0.454
3lcjCOAPhosphopantetheine adenylyltransferase/0.452
2yj5ATPCopper-transporting ATPase/0.451
1yidATPTryptophan--tRNA ligase 26.1.1.20.449
3iocA5DPantothenate synthetase6.3.2.10.445
4jyzATPGlutamine--tRNA ligase6.1.1.180.443
3rsv3RSBeta-secretase 13.4.23.460.440
4frkDWDBeta-secretase 13.4.23.460.440