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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3q2jCKIAminoglycoside 3'-phosphotransferase2.7.1.95

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3q2jCKIAminoglycoside 3'-phosphotransferase2.7.1.951.000
3tm0ANPAminoglycoside 3'-phosphotransferase2.7.1.950.590
2bkkADPAminoglycoside 3'-phosphotransferase2.7.1.950.568
1j7uANPAminoglycoside 3'-phosphotransferase2.7.1.950.517
1j7lADPAminoglycoside 3'-phosphotransferase2.7.1.950.509
2b0qADPAminoglycoside 3'-phosphotransferase2.7.1.950.501
3l3lL3LPoly [ADP-ribose] polymerase 12.4.2.300.477
4bgbADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases/0.474
1l8tADPAminoglycoside 3'-phosphotransferase2.7.1.950.473
1xh7R96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.468
3c35KAIGlutamate receptor ionotropic, kainate 1/0.468
2ij7TPFMycocyclosin synthase1.14.21.90.465
3afhGSUGlutamate--tRNA ligase 2/0.461
4bfxZVXPantothenate kinase2.7.1.330.458
5d4vYGPUncharacterized protein MJ0489/0.456
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.455
2cg5COAL-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase2.7.80.454
2po7CHDFerrochelatase, mitochondrial4.99.1.10.454
2v5aLZLBiotin carboxylase6.3.4.140.453
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.452
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.451
3rvhHQ2Lysine-specific demethylase 4A1.14.110.451
4iae1DXAlr2278 protein/0.451
5cmx0G6Prothrombin3.4.21.50.451
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.450
3ivcFG4Pantothenate synthetase6.3.2.10.449
2a4xBLMMitomycin-binding protein/0.448
2cv2GSUGlutamate--tRNA ligase6.1.1.170.448
1ftlDNQGlutamate receptor 2/0.446
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.446
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.445
4zqmXMPInosine-5'-monophosphate dehydrogenase/0.445
2rd678PPoly [ADP-ribose] polymerase 12.4.2.300.444
1npdNADQuinate/shikimate dehydrogenase/0.443
2abbFMNPentaerythritol tetranitrate reductase/0.443
4x7uZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.443
3h3t16HCollagen type IV alpha-3-binding protein/0.442
1o9bNAIQuinate/shikimate dehydrogenase/0.441
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.441
4ktl1CQCytochrome P450/0.441
2in6839Wee1-like protein kinase2.7.10.20.440
3h3r14HCollagen type IV alpha-3-binding protein/0.440