scPDB - Distribution of Binding site Similarity values of 3ptq entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3ptq	NFG	Beta-glucosidase 12

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3ptq	NFG	Beta-glucosidase 12	/	1.000
3zj6	VM2	Raucaffricine-O-beta-D-glucosidase	3.2.1.125	0.500
3aiq	HBO	4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic	3.2.1.182	0.495
3aiv	HBO	4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic	3.2.1.182	0.467
1v08	NTZ	4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic	3.2.1.182	0.462
3u57	DH8	Raucaffricine-O-beta-D-glucosidase	3.2.1.125	0.462
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.461
3vil	SA0	Beta-glucosidase	/	0.461
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.450
4rxp	DTP	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	3.1.5	0.449
3zj7	C1K	Strictosidine-O-beta-D-glucosidase	3.2.1.105	0.442