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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ozrOZRCatechol O-methyltransferase2.1.1.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ozrOZRCatechol O-methyltransferase2.1.1.61.000
3nw9637Catechol O-methyltransferase2.1.1.60.597
3oe4610Catechol O-methyltransferase2.1.1.60.595
3oe5611Catechol O-methyltransferase2.1.1.60.591
3r6tLU1Catechol O-methyltransferase2.1.1.60.590
3ozsOZSCatechol O-methyltransferase2.1.1.60.582
3a7dFBNCatechol O-methyltransferase2.1.1.60.578
1jr4CL4Catechol O-methyltransferase2.1.1.60.571
3hvk719Catechol O-methyltransferase2.1.1.60.562
3oztOZZCatechol O-methyltransferase2.1.1.60.560
3nwb659Catechol O-methyltransferase2.1.1.60.523
3cbgSAHO-methyltransferase/0.494
3nwe662Catechol O-methyltransferase2.1.1.60.494
1susSAHCaffeoyl-CoA O-methyltransferase2.1.1.1040.480
4jv81M1Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.476
3c3ySAHO-methyltransferase/0.475
3hvi619Catechol O-methyltransferase2.1.1.60.475
3fe1ADPHeat shock 70 kDa protein 6/0.469
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.463
2r0pK2CPutative FAD-monooxygenase/0.457
4dymIYZActivin receptor type-12.7.11.300.455
3a25SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase/0.453
4oa5SAHO-methyltransferase family protein/0.452
1qbu846Gag-Pol polyprotein3.4.23.160.451
3ntaFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.449
3tr6SAHO-methyltransferase/0.449
1oriSAHProtein arginine N-methyltransferase 1/0.448
4burNADApoptosis-inducing factor 1, mitochondrial1.1.10.448
1x2hLPALipoate-protein ligase A6.3.1.200.447
3cgeFADCoenzyme A disulfide reductase/0.447
3el9DR7Gag-Pol polyprotein3.4.23.160.447
3i8aN22Dihydrofolate reductase1.5.1.30.447
2z97CAMCamphor 5-monooxygenase1.14.15.10.445
3ix4TX1Transcriptional activator protein LasR/0.445
4dscA8SAbscisic acid receptor PYL3/0.445
3s1cZIRCytokinin dehydrogenase 11.5.99.120.444
3uibSB2Putative mitogen-activated protein kinase/0.444
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.443
4l4bCAMCamphor 5-monooxygenase1.14.15.10.443
1zgaHMKIsoflavone 4'-O-methyltransferase/0.442
2g1pSAHDNA adenine methylase2.1.1.720.442
2w6qOA5Biotin carboxylase6.3.4.140.442
2zi53L1Deoxycytidine kinase2.7.1.740.442
3eigMTXDihydrofolate reductase1.5.1.30.442
1jlcFTCGag-Pol polyprotein2.7.7.490.441
3t3r9PLCytochrome P450 2A61.14.130.441
2a1nCAMCamphor 5-monooxygenase1.14.15.10.440
4ehuANP2-hydroxyisocaproyl-CoA dehydratase activator/0.440
4mv1ADPBiotin carboxylase6.3.4.140.440