scPDB - Distribution of Binding site Similarity values of 3nu0 entry / Site 1

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3nu0	3TU	Dihydrofolate reductase	1.5.1.3

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3nu0	3TU	Dihydrofolate reductase	1.5.1.3	1.000
3gi2	GHW	Dihydrofolate reductase	1.5.1.3	0.672
1u72	MTX	Dihydrofolate reductase	1.5.1.3	0.595
3ghw	GHW	Dihydrofolate reductase	1.5.1.3	0.584
1hfr	MOT	Dihydrofolate reductase	1.5.1.3	0.576
3ntz	3TZ	Dihydrofolate reductase	1.5.1.3	0.576
2w3m	FOL	Dihydrofolate reductase	1.5.1.3	0.570
4m6k	FOL	Dihydrofolate reductase	1.5.1.3	0.556
3gyf	51P	Dihydrofolate reductase	1.5.1.3	0.552
4kfj	FOL	Dihydrofolate reductase	1.5.1.3	0.541
1kms	LIH	Dihydrofolate reductase	1.5.1.3	0.537
4keb	FOL	Dihydrofolate reductase	1.5.1.3	0.536
1drf	FOL	Dihydrofolate reductase	1.5.1.3	0.531
1hfp	MOT	Dihydrofolate reductase	1.5.1.3	0.529
3ghv	GHC	Dihydrofolate reductase	1.5.1.3	0.527
1hfq	MOT	Dihydrofolate reductase	1.5.1.3	0.526
1ohj	COP	Dihydrofolate reductase	1.5.1.3	0.521
1ohk	COP	Dihydrofolate reductase	1.5.1.3	0.518
3nrr	D16	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.516
3l3r	OAG	Dihydrofolate reductase	1.5.1.3	0.509
4m6l	21V	Dihydrofolate reductase	1.5.1.3	0.509
4ky4	04J	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.504
2dhf	DZF	Dihydrofolate reductase	1.5.1.3	0.499
1kmv	LII	Dihydrofolate reductase	1.5.1.3	0.498
1pd9	CO4	Dihydrofolate reductase	1.5.1.3	0.498
2fzj	DH3	Dihydrofolate reductase	1.5.1.3	0.496
4eil	FOL	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.492
3n0h	TOP	Dihydrofolate reductase	1.5.1.3	0.484
1hb1	OCV	Isopenicillin N synthase	1.21.3.1	0.482
1obn	ASV	Isopenicillin N synthase	1.21.3.1	0.479
1dls	MTX	Dihydrofolate reductase	1.5.1.3	0.478
4dpd	DHF	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.478
1dhf	FOL	Dihydrofolate reductase	1.5.1.3	0.477
1u70	MTX	Dihydrofolate reductase	1.5.1.3	0.477
1blz	ACV	Isopenicillin N synthase	1.21.3.1	0.475
1mvt	DTM	Dihydrofolate reductase	1.5.1.3	0.473
4kbn	25U	Dihydrofolate reductase	1.5.1.3	0.473
3ufl	508	Beta-secretase 1	3.4.23.46	0.472
2jb4	A14	Isopenicillin N synthase	1.21.3.1	0.471
3d80	Q22	Dihydrofolate reductase	1.5.1.3	0.471
1hb3	SCV	Isopenicillin N synthase	1.21.3.1	0.469
2vbp	VB1	Isopenicillin N synthase	1.21.3.1	0.469
4kak	06U	Dihydrofolate reductase	1.5.1.3	0.469
1s3u	TQD	Dihydrofolate reductase	1.5.1.3	0.468
1w06	W05	Isopenicillin N synthase	1.21.3.1	0.465
2ivi	ACW	Isopenicillin N synthase	1.21.3.1	0.463
4kfj	1R0	Dihydrofolate reductase	1.5.1.3	0.462
1yhj	R6C	Pyridoxal kinase	2.7.1.35	0.459
3hxe	BD8	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.459
1q0r	AKT	Aclacinomycin methylesterase RdmC	3.1.1.95	0.458
1ygk	RRC	Pyridoxal kinase	2.7.1.35	0.458
1bk0	ACV	Isopenicillin N synthase	1.21.3.1	0.456
1boz	PRD	Dihydrofolate reductase	1.5.1.3	0.456
3rvi	RVI	Beta-secretase 1	3.4.23.46	0.456
2vcm	M11	Isopenicillin N synthase	1.21.3.1	0.455
2y6f	M9F	Isopenicillin N synthase	1.21.3.1	0.455
2gvc	FAD	Thiol-specific monooxygenase	1.14.13	0.454
2wo7	ASV	Isopenicillin N synthase	1.21.3.1	0.453
3zoi	M2W	Isopenicillin N synthase	1.21.3.1	0.453
3hxc	BD6	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.451
3pz3	PZ3	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.451
4bb3	KKA	Isopenicillin N synthase	1.21.3.1	0.451
1q0z	AKA	Aclacinomycin methylesterase RdmC	3.1.1.95	0.450
1udt	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase	/	0.450
2bu9	HFV	Isopenicillin N synthase	1.21.3.1	0.450
2wjo	QUD	Beta-secretase 1	3.4.23.46	0.449
4iar	ERM	5-hydroxytryptamine receptor 1B	/	0.449
1daj	MOT	Dihydrofolate reductase	1.5.1.3	0.448
2fm5	M99	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.448
3hl0	NAD	Maleylacetate reductase	/	0.448
4gtv	7TR	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.448
1ry0	PG2	Aldo-keto reductase family 1 member C3	/	0.447
1ygj	RMC	Pyridoxal kinase	2.7.1.35	0.447
2vbd	V10	Isopenicillin N synthase	1.21.3.1	0.447
3hxf	BD9	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.447
3s3v	TOP	Dihydrofolate reductase	1.5.1.3	0.446
4gts	7TP	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.446
1mvs	DTM	Dihydrofolate reductase	1.5.1.3	0.445
1pd8	CO4	Dihydrofolate reductase	1.5.1.3	0.445
1pqc	444	Oxysterols receptor LXR-beta	/	0.445
2xve	FAD	Putative flavin-containing monooxygenase	/	0.445
3c72	CX1	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.445
3jsu	KA5	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.445
3qly	55V	Uncharacterized protein	/	0.445
2y60	M8F	Isopenicillin N synthase	1.21.3.1	0.444
3hxb	BD5	Geranylgeranyl transferase type-2 subunit beta	2.5.1.60	0.444
3sl8	JN7	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.444
4b12	C23	Glycylpeptide N-tetradecanoyltransferase	/	0.444
5std	UNN	Scytalone dehydratase	4.2.1.94	0.444
1oc1	ASV	Isopenicillin N synthase	1.21.3.1	0.443
3zky	WT4	Isopenicillin N synthase	1.21.3.1	0.443
2ejz	SAH	Diphthine synthase	/	0.442
2yne	YNE	Glycylpeptide N-tetradecanoyltransferase	/	0.442
4b68	FAD	L-ornithine N(5)-monooxygenase	/	0.442
2h42	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase	/	0.441
3k47	D09	Dihydrofolate reductase	1.5.1.3	0.441
3nxr	D2D	Dihydrofolate reductase	1.5.1.3	0.441
3zku	HCV	Isopenicillin N synthase	1.21.3.1	0.441