scPDB - 3ufl entry

Protein Data Bank Entry:

PDB ID : 3ufl

Resolution :1.900 Å

Experimental Method : X-ray

Deposition Date : 2011-11-01

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Beta-secretase 1
ID:	BACE1_HUMAN
AC:	P56817
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	3.4.23.46

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	25.851
Number of residues:	38
Including
Standard Amino Acids:	35
Non Standard Amino Acids:	0
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.200	1164.375

% Hydrophobic	% Polar
40.58	59.42
According to VolSite

Ligand :

HET Code:	508
Formula:	C31H35N2O
Molecular weight:	451.622 g/mol
DrugBank ID:	-
Buried Surface Area:	65.43 %
Polar Surface area:	36.92 Å2

Number of
H-Bond Acceptors:	1
H-Bond Donors:	1
Rings:	6
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	3

Mass center Coordinates

X	Y	Z
31.989	37.1074	0.107794

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C24	CD2	LEU- 30	3.6	0	Hydrophobic	false
N	OD2	ASP- 32	2.67	168.33	H-Bond (Ligand Donor)	false
N	OD2	ASP- 32	2.67	0	Ionic (Ligand Cationic)	false
N	OD1	ASP- 32	3.31	0	Ionic (Ligand Cationic)	false
C27	CB	SER- 35	3.79	0	Hydrophobic	false
C9	CG1	VAL- 69	3.68	0	Hydrophobic	false
C16	CG1	VAL- 69	4.24	0	Hydrophobic	false
C31	CG1	VAL- 69	3.51	0	Hydrophobic	false
C19	CE2	TYR- 71	3.67	0	Hydrophobic	false
C9	CD1	TYR- 71	3.48	0	Hydrophobic	false
C18	CZ	TYR- 71	3.89	0	Hydrophobic	false
C11	CB	TYR- 71	3.51	0	Hydrophobic	false
C7	CE1	PHE- 108	3.87	0	Hydrophobic	false
C14	CB	PHE- 108	3.75	0	Hydrophobic	false
C7	CD1	ILE- 118	4.42	0	Hydrophobic	false
C25	CD1	ILE- 118	3.83	0	Hydrophobic	false
C28	CD1	ILE- 126	4.29	0	Hydrophobic	false
C30	CG	ARG- 128	4.48	0	Hydrophobic	false
N	OD2	ASP- 228	2.71	161.92	H-Bond (Ligand Donor)	false
N	OD2	ASP- 228	2.71	0	Ionic (Ligand Cationic)	false
N	OD1	ASP- 228	2.72	0	Ionic (Ligand Cationic)	false