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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3mn7ATPActin-5C

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3mn7ATPActin-5C/1.000
3mn6ATPActin-5C/0.623
1eqyATPActin, alpha skeletal muscle/0.612
4cbxATPActin-2/0.593
3mn9ATPActin-5C/0.584
4jhdANPActin-5C/0.580
1lotATPActin, alpha skeletal muscle/0.570
3m6gATPActin, alpha skeletal muscle/0.566
3tu5ATPActin, alpha skeletal muscle/0.565
1c0fATPMajor actin/0.559
1s22ATPActin, alpha skeletal muscle/0.559
2q36ATPActin, alpha skeletal muscle/0.559
3el2ATPActin-5C/0.556
4k41ATPActin, alpha skeletal muscle/0.556
1rgiATPActin, alpha skeletal muscle/0.555
1t44ATPActin, alpha skeletal muscle/0.552
1yxqATPActin, alpha skeletal muscle/0.550
4pkgATPActin, alpha skeletal muscle/0.550
4pl8ATPActin, alpha skeletal muscle/0.550
5ce3ATPActin/0.548
1qz5ATPActin, alpha skeletal muscle/0.547
1h1vATPActin, alpha skeletal muscle/0.545
4m63ATPActin-5C/0.541
3eksATPActin-5C/0.539
3u9dATPActin, alpha skeletal muscle/0.537
1nm1ATPMajor actin/0.534
3u4lATPActin, cytoplasmic 1/0.534
3ffkATPActin, alpha skeletal muscle/0.533
4k42ADPActin, alpha skeletal muscle/0.532
2oanATPActin, cytoplasmic 1/0.531
3a5mATPMajor actin/0.530
3dawATPActin, alpha skeletal muscle/0.530
4ci6ATPActin/0.528
2p9kATPActin-related protein 2/0.523
4k43ADPActin, alpha skeletal muscle/0.522
1nmdATPMajor actin/0.521
4pkhADPActin, alpha skeletal muscle/0.520
1ijjATPActin, alpha skeletal muscle/0.518
2v51ATPActin, alpha skeletal muscle/0.506
1dejATPMajor actin/0.495
1kxpATPActin, alpha skeletal muscle/0.494
3w3dATPActin, gamma-enteric smooth muscle/0.491
3m1fATPActin, alpha skeletal muscle/0.489
4rwtANPActin-5C/0.488
1mduATPActin, alpha skeletal muscle/0.486
2q97ATPActin, alpha skeletal muscle/0.478
4pkiATPActin, alpha skeletal muscle/0.476
3a5oATPMajor actin/0.466
2a41ATPActin, alpha skeletal muscle/0.461
1nlvATPMajor actin/0.453
5eoxADPType 4 fimbrial biogenesis protein PilM/0.447
3chwATPMajor actin/0.446