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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3kpfFADPolyamine oxidase1.5.3.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3kpfFADPolyamine oxidase1.5.3.141.000
1h81FADPolyamine oxidase1.5.3.140.568
2iw5FADLysine-specific histone demethylase 1A10.555
3cndFADPolyamine oxidase FMS1/0.554
3cn8FADPolyamine oxidase FMS1/0.549
3cntFADPolyamine oxidase FMS1/0.539
2uxxFAJLysine-specific histone demethylase 1A10.538
1xpqFADPolyamine oxidase FMS1/0.529
4echFADPolyamine oxidase FMS1/0.523
3zdnFADMonoamine oxidase N1.4.3.40.514
4guuFA9Lysine-specific histone demethylase 1B10.511
4fwjFADLysine-specific histone demethylase 1B10.509
5l3dFADLysine-specific histone demethylase 1A10.505
3k7tFAD6-hydroxy-L-nicotine oxidase/0.503
2yg7FADPutrescine oxidase/0.501
2babFADPutative aminooxidase/0.488
3rhaFDAPutrescine oxidase/0.485
2ba9FADPutative aminooxidase/0.481
4i58FADCyclohexylamine Oxidase/0.481
2bacFADPutative aminooxidase/0.476
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.473
2jb1FADL-amino acid oxidase/0.471
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.469
2yg4FADPutrescine oxidase/0.461
3kveFADL-amino-acid oxidase/0.459
2b9yFADPutative aminooxidase/0.453
1tdoFADL-amino-acid oxidase1.4.3.20.451
3qj4FADRenalase/0.451
4cnjFADL-amino acid oxidase/0.450
2b9xFADPutative aminooxidase/0.446
1cf3FADGlucose oxidase1.1.3.40.443
1h83FADPolyamine oxidase1.5.3.140.443
3bi2FADPolyamine oxidase FMS1/0.443
2jb2FADL-amino acid oxidase/0.442