Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3iodA6DPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3iodA6DPantothenate synthetase6.3.2.11.000
3iobA4DPantothenate synthetase6.3.2.10.636
3imeBZ2Pantothenate synthetase6.3.2.10.620
3iocA5DPantothenate synthetase6.3.2.10.576
3coy53HPantothenate synthetase6.3.2.10.546
3ivgFG5Pantothenate synthetase6.3.2.10.545
3coz54HPantothenate synthetase6.3.2.10.539
3isjA8DPantothenate synthetase6.3.2.10.524
5hg0SAMPantothenate synthetase/0.513
3imgBZ2Pantothenate synthetase6.3.2.10.512
3ioeA7DPantothenate synthetase6.3.2.10.486
4de50JDPantothenate synthetase6.3.2.10.476
2x3fAPCPantothenate synthetase/0.468
1n2iPAJPantothenate synthetase6.3.2.10.467
1n2hPAJPantothenate synthetase6.3.2.10.465
3ag6PAJPantothenate synthetase/0.455
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.455
2a84ATPPantothenate synthetase6.3.2.10.450
3cow52HPantothenate synthetase6.3.2.10.443