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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fo7IMNPhospholipase A2 VRV-PL-VIIIa

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3fo7IMNPhospholipase A2 VRV-PL-VIIIa/1.000
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.40.506
1dfoFFOSerine hydroxymethyltransferase2.1.2.10.474
1skgVAL_ALA_PHE_ARG_SERBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.463
2vqoTFGHistone deacetylase 43.5.1.980.455
1kyzFERCaffeic acid 3-O-methyltransferase2.1.1.680.450
2oyfIACBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.450
2p2bCOAAcetyl-coenzyme A synthetase/0.450
4zgsNADPutative D-lactate dehydrogenase/0.450
3pblETQD(3) dopamine receptor/0.449
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.448
3zy5GFBGDP-fucose protein O-fucosyltransferase 12.4.1.2210.447
3a1l2CCCytochrome P450/0.444
1qxlFR8Adenosine deaminase3.5.4.40.443
3a8iC2FAminomethyltransferase2.1.2.100.442
3tm5SFGUncharacterized protein/0.442
1dv2ATPBiotin carboxylase6.3.4.140.441
1v25ANPLong-chain-fatty-acid--CoA ligase6.2.1.30.440
2vczVC3Hematopoietic prostaglandin D synthase/0.440
3br3ETHTH-type transcriptional regulator QacR/0.440
3kozZ97D-ornithine 4,5-aminomutase subunit beta/0.440
4hmbPZZPhospholipase A2 VRV-PL-VIIIa/0.440