1.990 Å
X-ray
2009-10-06
| Name: | Aminomethyltransferase |
|---|---|
| ID: | GCST_ECOLI |
| AC: | P27248 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 2.1.2.10 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 18.909 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.004 | 786.375 |
| % Hydrophobic | % Polar |
|---|---|
| 54.51 | 45.49 |
| According to VolSite | |

| HET Code: | C2F |
|---|---|
| Formula: | C20H23N7O6 |
| Molecular weight: | 457.440 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 59.47 % |
| Polar Surface area: | 204.14 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 11 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 9 |
| X | Y | Z |
|---|---|---|
| 7.50945 | 13.5447 | 41.517 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C11 | SD | MET- 51 | 3.76 | 0 | Hydrophobic |
| C9 | CE1 | TYR- 84 | 3.94 | 0 | Hydrophobic |
| C15 | CE1 | TYR- 84 | 3.29 | 0 | Hydrophobic |
| N10 | OD2 | ASP- 97 | 3.01 | 122.63 | H-Bond (Ligand Donor) |
| C17 | CD1 | ILE- 99 | 3.74 | 0 | Hydrophobic |
| N8 | O | VAL- 111 | 2.99 | 163.81 | H-Bond (Ligand Donor) |
| CB | CZ | PHE- 173 | 4.3 | 0 | Hydrophobic |
| C11 | CE1 | TYR- 188 | 4.14 | 0 | Hydrophobic |
| NA2 | OE1 | GLU- 195 | 2.62 | 159.44 | H-Bond (Ligand Donor) |
| N3 | OE2 | GLU- 195 | 2.83 | 149.38 | H-Bond (Ligand Donor) |
| N3 | OE1 | GLU- 195 | 3.06 | 132.09 | H-Bond (Ligand Donor) |
| C12 | SD | MET- 232 | 4.19 | 0 | Hydrophobic |
| C13 | CB | MET- 232 | 3.68 | 0 | Hydrophobic |
| CB | CH2 | TRP- 252 | 3.5 | 0 | Hydrophobic |
| O4 | O | HOH- 669 | 2.61 | 179.98 | H-Bond (Protein Donor) |