1.990 Å
X-ray
2009-10-06
Name: | Aminomethyltransferase |
---|---|
ID: | GCST_ECOLI |
AC: | P27248 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 2.1.2.10 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 18.909 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.004 | 786.375 |
% Hydrophobic | % Polar |
---|---|
54.51 | 45.49 |
According to VolSite |
HET Code: | C2F |
---|---|
Formula: | C20H23N7O6 |
Molecular weight: | 457.440 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.47 % |
Polar Surface area: | 204.14 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
7.50945 | 13.5447 | 41.517 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C11 | SD | MET- 51 | 3.76 | 0 | Hydrophobic |
C9 | CE1 | TYR- 84 | 3.94 | 0 | Hydrophobic |
C15 | CE1 | TYR- 84 | 3.29 | 0 | Hydrophobic |
N10 | OD2 | ASP- 97 | 3.01 | 122.63 | H-Bond (Ligand Donor) |
C17 | CD1 | ILE- 99 | 3.74 | 0 | Hydrophobic |
N8 | O | VAL- 111 | 2.99 | 163.81 | H-Bond (Ligand Donor) |
CB | CZ | PHE- 173 | 4.3 | 0 | Hydrophobic |
C11 | CE1 | TYR- 188 | 4.14 | 0 | Hydrophobic |
NA2 | OE1 | GLU- 195 | 2.62 | 159.44 | H-Bond (Ligand Donor) |
N3 | OE2 | GLU- 195 | 2.83 | 149.38 | H-Bond (Ligand Donor) |
N3 | OE1 | GLU- 195 | 3.06 | 132.09 | H-Bond (Ligand Donor) |
C12 | SD | MET- 232 | 4.19 | 0 | Hydrophobic |
C13 | CB | MET- 232 | 3.68 | 0 | Hydrophobic |
CB | CH2 | TRP- 252 | 3.5 | 0 | Hydrophobic |
O4 | O | HOH- 669 | 2.61 | 179.98 | H-Bond (Protein Donor) |