sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3fi8 | OPE | Choline kinase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3fi8 | OPE | Choline kinase | / | 1.000 | |
| 3zm9 | QMQ | Choline kinase alpha | 2.7.1.32 | 0.495 | |
| 2jf6 | S55 | Strictosidine-O-beta-D-glucosidase | 3.2.1.105 | 0.489 | |
| 3gn7 | 3GN | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.489 | |
| 2gg8 | U15 | Methionine aminopeptidase | / | 0.465 | |
| 3mes | PT3 | Putative choline kinase | / | 0.462 | |
| 4n9q | FMN | FMN-dependent NADH-azoreductase 1 | / | 0.458 | |
| 4br3 | U85 | Choline kinase alpha | 2.7.1.32 | 0.457 | |
| 2ouu | 35G | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.456 | |
| 2v0m | KLN | Cytochrome P450 3A4 | / | 0.456 | |
| 3rtn | RTN | Beta-secretase 1 | 3.4.23.46 | 0.455 | |
| 2rcw | AAI | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.451 | |
| 2rd2 | QSI | Glutamine--tRNA ligase | 6.1.1.18 | 0.451 | |
| 3arq | DM5 | Chitinase A | / | 0.451 | |
| 2f98 | NGV | Aklanonic acid methyl ester cyclase AcmA | 5.5.1.23 | 0.450 | |
| 1sjw | NGV | Nogalonic acid methyl ester cyclase | / | 0.449 | |
| 3l3l | L3L | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.448 | |
| 1ex7 | 5GP | Guanylate kinase | 2.7.4.8 | 0.447 | |
| 1y2c | 3DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.447 | |
| 3aiv | HBO | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic | 3.2.1.182 | 0.447 | |
| 3rm8 | RM8 | Acidic mammalian chitinase | 3.2.1.14 | 0.447 | |
| 1y2k | 7DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.446 | |
| 3c49 | KU8 | Poly [ADP-ribose] polymerase 3 | 2.4.2.30 | 0.446 | |
| 1xid | ASC | Xylose isomerase | 5.3.1.5 | 0.443 | |
| 2rd6 | 78P | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.443 | |
| 1foa | UD1 | Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | 2.4.1.101 | 0.442 | |
| 1g60 | SAM | Modification methylase MboII | 2.1.1.72 | 0.442 | |
| 2q15 | 3MR | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 2q94 | A04 | Methionine aminopeptidase | / | 0.442 | |
| 2vn1 | FK5 | Peptidylprolyl isomerase | / | 0.442 | |
| 4n65 | FMN | FMN-dependent NADH-azoreductase 1 | / | 0.441 | |
| 3gjw | GJW | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.440 | |
| 3rsv | 3RS | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4ts7 | ADP | Purine phosphoribosyltransferase (GpT-1) | / | 0.440 |