2.350 Å
X-ray
2010-03-31
Name: | Putative choline kinase |
---|---|
ID: | Q5CUP2_CRYPI |
AC: | Q5CUP2 |
Organism: | Cryptosporidium parvum |
Reign: | Eukaryota |
TaxID: | 353152 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 21.801 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | ADP |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.564 | 641.250 |
% Hydrophobic | % Polar |
---|---|
35.79 | 64.21 |
According to VolSite |
HET Code: | PT3 |
---|---|
Formula: | C7H12NO5 |
Molecular weight: | 190.174 g/mol |
DrugBank ID: | DB03390 |
Buried Surface Area: | 54.68 % |
Polar Surface area: | 109.69 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
13.9545 | 2.79046 | 37.5922 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C42 | CB | ASN- 272 | 4.11 | 0 | Hydrophobic |
O1 | OH | TYR- 288 | 3.03 | 149.51 | H-Bond (Protein Donor) |
C2 | CE2 | TYR- 288 | 4.05 | 0 | Hydrophobic |
C43 | CD2 | TYR- 309 | 4.11 | 0 | Hydrophobic |
O2 | MG | MG- 426 | 2.27 | 0 | Metal Acceptor |