1.900 Å
X-ray
2013-02-06
Name: | Choline kinase alpha |
---|---|
ID: | CHKA_HUMAN |
AC: | P35790 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.1.32 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 30.116 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.027 | 1350.000 |
% Hydrophobic | % Polar |
---|---|
41.00 | 59.00 |
According to VolSite |
HET Code: | QMQ |
---|---|
Formula: | C30H34N7 |
Molecular weight: | 492.638 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.83 % |
Polar Surface area: | 76.73 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 5 |
Aromatic rings: | 5 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
6.78551 | -26.7239 | -21.0517 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAI | CG2 | ILE- 116 | 3.74 | 0 | Hydrophobic |
CAE | CB | ARG- 117 | 3.99 | 0 | Hydrophobic |
CAT | CD | ARG- 117 | 3.48 | 0 | Hydrophobic |
CAI | CD1 | LEU- 124 | 3.93 | 0 | Hydrophobic |
N6 | O | GLN- 207 | 3.08 | 155.08 | H-Bond (Ligand Donor) |
N1 | N | ILE- 209 | 2.91 | 173.06 | H-Bond (Protein Donor) |
CAR | CD | ARG- 213 | 4.27 | 0 | Hydrophobic |
CAH | CD | ARG- 213 | 3.55 | 0 | Hydrophobic |
CAV | CD2 | LEU- 313 | 4.37 | 0 | Hydrophobic |
CAH | CD1 | ILE- 329 | 3.67 | 0 | Hydrophobic |
CAB | CE2 | TYR- 333 | 4.09 | 0 | Hydrophobic |
CAF | CB | TYR- 354 | 3.7 | 0 | Hydrophobic |
CAA | CD2 | TRP- 420 | 3.51 | 0 | Hydrophobic |
CAB | CZ3 | TRP- 420 | 3.6 | 0 | Hydrophobic |
CAB | CH2 | TRP- 423 | 4.48 | 0 | Hydrophobic |
CAM | CH2 | TRP- 423 | 3.47 | 0 | Hydrophobic |