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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3el2ATPActin-5C

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3el2ATPActin-5C/1.000
4k43ADPActin, alpha skeletal muscle/0.595
1lotATPActin, alpha skeletal muscle/0.589
4k42ADPActin, alpha skeletal muscle/0.588
1eqyATPActin, alpha skeletal muscle/0.586
1nmdATPMajor actin/0.584
3tu5ATPActin, alpha skeletal muscle/0.583
3mn6ATPActin-5C/0.582
4jhdANPActin-5C/0.581
3m6gATPActin, alpha skeletal muscle/0.579
5ce3ATPActin/0.579
1rgiATPActin, alpha skeletal muscle/0.578
2q36ATPActin, alpha skeletal muscle/0.578
4cbxATPActin-2/0.576
1c0fATPMajor actin/0.574
4k41ATPActin, alpha skeletal muscle/0.573
4pkgATPActin, alpha skeletal muscle/0.573
1s22ATPActin, alpha skeletal muscle/0.570
1t44ATPActin, alpha skeletal muscle/0.570
3mn9ATPActin-5C/0.570
4pkhADPActin, alpha skeletal muscle/0.562
3mn7ATPActin-5C/0.558
1qz5ATPActin, alpha skeletal muscle/0.557
1h1vATPActin, alpha skeletal muscle/0.556
3ffkATPActin, alpha skeletal muscle/0.556
3u9dATPActin, alpha skeletal muscle/0.556
1nm1ATPMajor actin/0.554
1yxqATPActin, alpha skeletal muscle/0.553
1ijjATPActin, alpha skeletal muscle/0.550
3a5mATPMajor actin/0.545
3u4lATPActin, cytoplasmic 1/0.536
4ci6ATPActin/0.535
4pkiATPActin, alpha skeletal muscle/0.535
1kxpATPActin, alpha skeletal muscle/0.531
4pl8ATPActin, alpha skeletal muscle/0.531
1mduATPActin, alpha skeletal muscle/0.528
3a5oATPMajor actin/0.527
1dejATPMajor actin/0.526
3m1fATPActin, alpha skeletal muscle/0.525
3eksATPActin-5C/0.523
3dawATPActin, alpha skeletal muscle/0.522
4m63ATPActin-5C/0.520
2v51ATPActin, alpha skeletal muscle/0.519
2oanATPActin, cytoplasmic 1/0.511
2p9kATPActin-related protein 2/0.507
3w3dATPActin, gamma-enteric smooth muscle/0.505
2q97ATPActin, alpha skeletal muscle/0.478
3ekuATPActin-5C/0.476
4rwtANPActin-5C/0.470
1wuaATPActin, alpha skeletal muscle/0.456
2a41ATPActin, alpha skeletal muscle/0.452
5eoxADPType 4 fimbrial biogenesis protein PilM/0.451