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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cow52HPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cow52HPantothenate synthetase6.3.2.11.000
1n2iPAJPantothenate synthetase6.3.2.10.665
1n2hPAJPantothenate synthetase6.3.2.10.632
3ivxFG6Pantothenate synthetase6.3.2.10.584
3coy53HPantothenate synthetase6.3.2.10.581
3ioeA7DPantothenate synthetase6.3.2.10.560
3coz54HPantothenate synthetase6.3.2.10.558
3isjA8DPantothenate synthetase6.3.2.10.528
2x3fAPCPantothenate synthetase/0.521
3iocA5DPantothenate synthetase6.3.2.10.503
5hg0SAMPantothenate synthetase/0.497
5kwvANPPantothenate synthetase/0.490
1n2eAPCPantothenate synthetase6.3.2.10.489
1n2gAPCPantothenate synthetase6.3.2.10.482
3ivgFG5Pantothenate synthetase6.3.2.10.475
3ag6PAJPantothenate synthetase/0.464
1n2jPAFPantothenate synthetase6.3.2.10.462
3iobA4DPantothenate synthetase6.3.2.10.454
3ivcFG4Pantothenate synthetase6.3.2.10.454
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.451
3iodA6DPantothenate synthetase6.3.2.10.447
3imgBZ2Pantothenate synthetase6.3.2.10.444