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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3co93MSGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3co93MSGenome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.631
3d5m4MSGenome polyprotein2.7.7.480.629
2fvc888Polyprotein/0.623
3tyvHI3Genome polyprotein2.7.7.480.618
4mka2AYGenome polyprotein2.7.7.480.617
2gc8885Polyprotein/0.613
4mk728OGenome polyprotein2.7.7.480.608
3u4o08EGenome polyprotein2.7.7.480.606
2giqNN2Genome polyprotein2.7.7.480.604
4mk928RGenome polyprotein2.7.7.480.602
3hkyIX6Genome polyprotein2.7.7.480.600
3uph0C1Genome polyprotein2.7.7.480.600
4iz02BIGenome polyprotein2.7.7.480.599
2yoj8Y6Genome polyprotein2.7.7.480.598
4mkb28VGenome polyprotein2.7.7.480.596
3d28B34Genome polyprotein2.7.7.480.593
3g86T18Genome polyprotein2.7.7.480.593
3igvB80Genome polyprotein2.7.7.480.593
3h5uH5UGenome polyprotein2.7.7.480.589
3ska053Genome polyprotein2.7.7.480.586
4ih71ERGenome polyprotein2.7.7.480.583
3gnvXNZGenome polyprotein2.7.7.480.582
3e51N35Genome polyprotein2.7.7.480.577
3h59H59Genome polyprotein2.7.7.480.575
4eaw0NQGenome polyprotein2.7.7.480.573
3bsa1PDGenome polyprotein2.7.7.480.571
3h2lYAKGenome polyprotein2.7.7.480.571
3cwj321Genome polyprotein2.7.7.480.566
3br9DEYGenome polyprotein2.7.7.480.564
3bsc2PDGenome polyprotein2.7.7.480.563
4ih61EPGenome polyprotein2.7.7.480.563
3csoXNIGenome polyprotein2.7.7.480.559
3gynB42Genome polyprotein2.7.7.480.559
3ske054Genome polyprotein2.7.7.480.558
3golXNDGenome polyprotein2.7.7.480.554
3cdeN3HGenome polyprotein2.7.7.480.548
3upi0C2Genome polyprotein2.7.7.480.548
3h5sH5SGenome polyprotein2.7.7.480.542
3gnwXNCGenome polyprotein2.7.7.480.538
1yvfPH7Polyprotein/0.530
4mk828QGenome polyprotein2.7.7.480.522
1z4uPH9Polyprotein/0.515
3h98B5PGenome polyprotein2.7.7.480.509
3hkwIX6Genome polyprotein2.7.7.480.495
3cvkN34Genome polyprotein2.7.7.480.483
4b4vL34Bifunctional protein FolD/0.458
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.452
2gjlFMNNitronate monooxygenase1.13.12.160.449
4frkDWDBeta-secretase 13.4.23.460.449
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.448
2qe5617Polyprotein/0.446
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.445
1ja0FMNNADPH--cytochrome P450 reductase/0.444
5a3bAPRSIR2 family protein/0.443
1fxsNAPGDP-L-fucose synthase/0.442
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.442
4b4w9L9Bifunctional protein FolD/0.441