Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cndFADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cndFADPolyamine oxidase FMS1/1.000
1xpqFADPolyamine oxidase FMS1/0.614
4echFADPolyamine oxidase FMS1/0.587
3cn8FADPolyamine oxidase FMS1/0.576
3cntFADPolyamine oxidase FMS1/0.554
5l3dFADLysine-specific histone demethylase 1A10.527
2uxxFAJLysine-specific histone demethylase 1A10.521
2iw5FADLysine-specific histone demethylase 1A10.518
3bi2FADPolyamine oxidase FMS1/0.516
4fwjFADLysine-specific histone demethylase 1B10.516
4guuFA9Lysine-specific histone demethylase 1B10.512
4i58FADCyclohexylamine Oxidase/0.488
3k7tFAD6-hydroxy-L-nicotine oxidase/0.484
4gdpFADPolyamine oxidase FMS1/0.480
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.480
3kpfFADPolyamine oxidase1.5.3.140.479
3zdnFADMonoamine oxidase N1.4.3.40.476
3bi5FADPolyamine oxidase FMS1/0.475
1h81FADPolyamine oxidase1.5.3.140.461
3rhaFDAPutrescine oxidase/0.459
1cf3FADGlucose oxidase1.1.3.40.453
2bacFADPutative aminooxidase/0.451
2yg7FADPutrescine oxidase/0.451
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.451
2babFADPutative aminooxidase/0.447
4mihFADPyranose 2-oxidase1.1.3.100.447
4z26FADPutative GMC-type oxidoreductase R13510.446
1galFADGlucose oxidase1.1.3.40.443
2b9yFADPutative aminooxidase/0.443
2yg4FADPutrescine oxidase/0.440