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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cn8FADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cn8FADPolyamine oxidase FMS1/1.000
1xpqFADPolyamine oxidase FMS1/0.603
3cndFADPolyamine oxidase FMS1/0.601
4echFADPolyamine oxidase FMS1/0.570
3cntFADPolyamine oxidase FMS1/0.560
4fwjFADLysine-specific histone demethylase 1B10.551
2uxxFAJLysine-specific histone demethylase 1A10.535
2iw5FADLysine-specific histone demethylase 1A10.532
5l3dFADLysine-specific histone demethylase 1A10.532
2yg7FADPutrescine oxidase/0.528
3zdnFADMonoamine oxidase N1.4.3.40.520
4guuFA9Lysine-specific histone demethylase 1B10.516
4i58FADCyclohexylamine Oxidase/0.516
3kpfFADPolyamine oxidase1.5.3.140.508
3rhaFDAPutrescine oxidase/0.503
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.501
1f8rFADL-amino-acid oxidase1.4.3.20.497
3k7tFAD6-hydroxy-L-nicotine oxidase/0.495
2yg4FADPutrescine oxidase/0.489
2babFADPutative aminooxidase/0.480
3bi2FADPolyamine oxidase FMS1/0.479
1tdnFADL-amino-acid oxidase1.4.3.20.478
4gdpFADPolyamine oxidase FMS1/0.469
3kveFADL-amino-acid oxidase/0.468
2jb1FADL-amino acid oxidase/0.466
2b9xFADPutative aminooxidase/0.463
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.462
1tdoFADL-amino-acid oxidase1.4.3.20.457
1h81FADPolyamine oxidase1.5.3.140.456
2b9yFADPutative aminooxidase/0.454
2ba9FADPutative aminooxidase/0.454
3bi5FADPolyamine oxidase FMS1/0.454
2bacFADPutative aminooxidase/0.451
1sezFADProtoporphyrinogen oxidase, mitochondrial1.3.3.40.448
3kkjFADRenalase/0.447
1tdkFADL-amino-acid oxidase1.4.3.20.443
3qj4FADRenalase/0.442