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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cgcFADCoenzyme A disulfide reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cgcFADCoenzyme A disulfide reductase/1.000
3cgbFADCoenzyme A disulfide reductase/0.646
3cgdFADCoenzyme A disulfide reductase/0.497
3icrFADCoenzyme A disulfide reductase/0.497
4jq9FADDihydrolipoyl dehydrogenase/0.496
3icsFADCoenzyme A disulfide reductase/0.478
1nhpFADNADH peroxidase1.11.1.10.472
4ocgFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.470
4eqsFADCoenzyme A disulfide reductase/0.466
2qaeFADDihydrolipoyl dehydrogenase1.8.1.40.461
1npxFADNADH peroxidase1.11.1.10.457
3oc4FADOxidoreductase, pyridine nucleotide-disulfide family/0.455
4jdrFADDihydrolipoyl dehydrogenase1.8.1.40.455
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.454
3urhFADDihydrolipoyl dehydrogenase/0.453
1yqzFADCoenzyme A disulfide reductase/0.452
3ic9FADPutative dihydrolipoamide dehydrogenase/0.452
1zy8FADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.451
2a8xFADDihydrolipoyl dehydrogenase1.8.1.40.450
2yquFADDihydrolipoyl dehydrogenase/0.449
1zx9FADMercuric reductase1.16.1.10.447
1zmcFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.446
2eq9FADDihydrolipoyl dehydrogenase/0.443
2f5zFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.443
2r9zFADGlutathione amide reductase/0.443
3ctyFADProbable thioredoxin reductase/0.443
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.443
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.441