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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3c7dNADOctopine dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3c7dNADOctopine dehydrogenase/1.000
3dj4UD1Bifunctional protein GlmU/0.468
4y6nUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.464
3sptUD1Bifunctional protein GlmU/0.463
4j2wFADKynurenine 3-monooxygenase/0.459
4g3sUD1Bifunctional protein GlmU/0.458
1ybmNAPUncharacterized protein At5g02240/0.457
2oapANPType II secretion system protein (GspE-2)/0.451
3mw9NAIGlutamate dehydrogenase 1, mitochondrial1.4.1.30.448
4g3qUD1Bifunctional protein GlmU/0.446
2hayFMNPutative NAD(P)H-flavin oxidoreductase/0.445
4j33FADKynurenine 3-monooxygenase/0.445
4j31FADKynurenine 3-monooxygenase/0.443
4yaw2AMNADPH--cytochrome P450 reductase/0.443
3w2wATPCRISPR system Cmr subunit Cmr2/0.441