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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bgvSAHmRNA cap guanine-N7 methyltransferase2.1.1.56

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bgvSAHmRNA cap guanine-N7 methyltransferase2.1.1.561.000
5e8jSAHmRNA cap guanine-N7 methyltransferase2.1.1.560.599
5je3SAHMethyl transferase/0.547
5bp9SAHPutative methyltransferase protein/0.520
5je2SAHMethyl transferase/0.518
2xvmSAHTellurite methyltransferase2.1.1.2650.506
5je4SAHMethyl transferase/0.500
4iv8SAMPhosphoethanolamine N-methyltransferase,putative/0.496
3eppSFGmRNA cap guanine-N7 methyltransferase2.1.1.560.494
4qtuSAM18S rRNA (guanine(1575)-N(7))-methyltransferase/0.477
4r6xSAHPhosphoethanolamine N-methyltransferase/0.469
3uj8SFGPhosphoethanolamine N-methyltransferase/0.468
3ssoSAHMycinamicin VI 2''-O-methyltransferase/0.467
4rtlSFGDNA adenine methylase2.1.1.720.466
4mwzSAMPhosphoethanolamine N-methyltransferase, putative/0.463
1nbiSAMGlycine N-methyltransferase2.1.1.200.462
4rv9SAHD-mycarose 3-C-methyltransferase/0.461
4uy6SAHHistidine N-alpha-methyltransferase/0.461
3p9kSAHCaffeic acid O-methyltransferase/0.458
3uj7SAMPhosphoethanolamine N-methyltransferase/0.458
1jqdSAHHistamine N-methyltransferase2.1.1.80.457
1ve3SAMUncharacterized protein/0.454
3ou7SAMSAM-dependent methyltransferase/0.454
5epeSAHUncharacterized protein/0.454
4obwSAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial/0.452
2gs9SAHUncharacterized protein/0.451
2h00SAHU6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase/0.451
5bp7SAHSAM-dependent methyltransferase/0.451
1kiaSAMGlycine N-methyltransferase2.1.1.200.449
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.449
4pyoSAHCatechol O-methyltransferase2.1.1.60.449
5fm7ADPRuvB-like helicase/0.449
3gxoSAHMitomycin biosynthesis 6-O-methyltransferase/0.448
3slkNDPPolyketide synthase extender module 2/0.448
3ieiSAHLeucine carboxyl methyltransferase 12.1.1.2330.447
4iv0SAMPhosphoethanolamine N-methyltransferase, putative/0.447
2bzgSAHThiopurine S-methyltransferase2.1.1.670.446
3i53SAH2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase/0.446
4gapNADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.446
2eg5SAH7-methylxanthosine synthase 1/0.445
2aotSAHHistamine N-methyltransferase2.1.1.80.443
4kdrSAHUbiquinone biosynthesis O-methyltransferase/0.441
1rjdSAMLeucine carboxyl methyltransferase 12.1.1.2330.440
2a14SAHIndolethylamine N-methyltransferase2.1.1.490.440
3sxjSAMPutative methyltransferase/0.440