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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bb3GDPTranslocase of chloroplast 33, chloroplastic3.6.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bb3GDPTranslocase of chloroplast 33, chloroplastic3.6.51.000
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.492
1ipeNDPTropinone reductase 21.1.1.2360.466
3toxNAPPutative oxidoreductase/0.459
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.457
4lcjNADC-terminal-binding protein 2/0.457
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.452
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.451
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.451
2h2aDNDProbable nicotinate-nucleotide adenylyltransferase/0.450
1h50FMNPentaerythritol tetranitrate reductase/0.448
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.448
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.446
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.444
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.444
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.444
2h12CMXCitrate synthase/0.443
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.442
2hs1017Protease/0.442
2xpwOTCTetracycline repressor protein class D/0.442
2ym1NAPPhenylacetone monooxygenase1.14.13.920.442
3sufSUEPolyprotein/0.442
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.442
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.441
4bfvZVVPantothenate kinase2.7.1.330.441
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.441
5idwNAPShort-chain dehydrogenase/reductase SDR/0.441
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.440
2hrbNAPCarbonyl reductase [NADPH] 31.1.1.1840.440
2ylwNAPPhenylacetone monooxygenase1.14.13.920.440
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
4j7xNAPSepiapterin reductase1.1.1.1530.440