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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3a13CAPRibulose bisphosphate carboxylase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3a13CAPRibulose bisphosphate carboxylase/1.000
4wh3ATPN-acetylhexosamine 1-kinase2.7.1.1620.457
4zwgDTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.452
1dq8COA3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.449
1h47C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4.6.1.120.449
1jpaANPEphrin type-B receptor 22.7.10.10.445
1rx1NAPDihydrofolate reductase1.5.1.30.445
4gk3L87Ephrin type-A receptor 32.7.10.10.445
4r1lADPPhenylacetate-coenzyme A ligase/0.445
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.444
2henADPEphrin type-B receptor 22.7.10.10.441
3d8vUD1Bifunctional protein GlmU/0.441
3pce3HPProtocatechuate 3,4-dioxygenase alpha chain1.13.11.30.441
3pce3HPProtocatechuate 3,4-dioxygenase beta chain1.13.11.30.441