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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2zd1T27Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2zd1T27Gag-Pol polyprotein2.7.7.491.000
4id5T27Gag-Pol polyprotein2.7.7.490.763
4g1qT27Gag-Pol polyprotein2.7.7.490.749
4i2pG73Gag-Pol polyprotein2.7.7.490.743
4ifvT27Gag-Pol polyprotein2.7.7.490.658
2ze2T27Gag-Pol polyprotein2.7.7.490.633
3qlhT27Gag-Pol polyprotein2.7.7.490.609
4i2q1BTGag-Pol polyprotein2.7.7.490.587
4kfbT27Gag-Pol polyprotein2.7.7.490.586
3bgrT27Gag-Pol polyprotein2.7.7.490.577
4ig3T27Gag-Pol polyprotein2.7.7.490.571
1tl3H20Gag-Pol polyprotein2.7.7.490.567
3is9AC7Gag-Pol polyprotein2.7.7.490.550
1c1bGCAGag-Pol polyprotein2.7.7.490.545
1rt4UC1Gag-Pol polyprotein2.7.7.490.523
1tl1H18Gag-Pol polyprotein2.7.7.490.523
3mec65BGag-Pol polyprotein2.7.7.490.517
2ban357Gag-Pol polyprotein2.7.7.490.504
3meeT27Gag-Pol polyprotein2.7.7.490.504
1tktH12Gag-Pol polyprotein2.7.7.490.497
1tkzH16Gag-Pol polyprotein2.7.7.490.490
3med65BGag-Pol polyprotein2.7.7.490.490
2hnzPC0Gag-Pol polyprotein2.7.7.490.488
4kko1REGag-Pol polyprotein2.7.7.490.484
1s9eADBGag-Pol polyprotein2.7.7.490.482
1s1wUC1Gag-Pol polyprotein2.7.7.490.481
3lalKRVGag-Pol polyprotein2.7.7.490.479
3lamKRPGag-Pol polyprotein2.7.7.490.479
1s6qTPBGag-Pol polyprotein2.7.7.490.478
3dmjGWEPol protein/0.475
3megT27Gag-Pol polyprotein2.7.7.490.474
4rw6494Gag-Pol polyprotein2.7.7.490.472
1rt5UC2Gag-Pol polyprotein2.7.7.490.469
2vg7NNIGag-Pol polyprotein2.7.7.490.469
1eetBFUGag-Pol polyprotein2.7.7.490.468
1vruAAPGag-Pol polyprotein2.7.7.490.467
4ko0JLJGag-Pol polyprotein2.7.7.490.467
1hpzAAPGag-Pol polyprotein2.7.7.490.466
2rf2MRXGag-Pol polyprotein2.7.7.490.464
2vg5NNCGag-Pol polyprotein2.7.7.490.464
1hnvTBOGag-Pol polyprotein2.7.7.490.463
3i0rRT3Gag-Pol polyprotein2.7.7.490.460
1revTB9Gag-Pol polyprotein2.7.7.490.458
2wonZZEGag-Pol polyprotein2.7.7.490.458
3irxUDRGag-Pol polyprotein2.7.7.490.457
3m8p65BGag-Pol polyprotein2.7.7.490.457
1tkxGWBGag-Pol polyprotein2.7.7.490.455
1rt7UC4Gag-Pol polyprotein2.7.7.490.453
1tvrTB9Gag-Pol polyprotein2.7.7.490.452
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.451
2xytTC9Soluble acetylcholine receptor/0.450
1ikwEFZGag-Pol polyprotein2.7.7.490.449
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.449
1ikyMSDGag-Pol polyprotein2.7.7.490.446
3p6nDSOCamphor 5-monooxygenase1.14.15.10.446
1s1tUC1Gag-Pol polyprotein2.7.7.490.445
4mfb29TGag-Pol polyprotein2.7.7.490.445
4jlj1NMDeoxycytidine kinase2.7.1.740.444
1fk9EFZGag-Pol polyprotein2.7.7.490.443
1hniAAAGag-Pol polyprotein2.7.7.490.442
2opqHBQGag-Pol polyprotein2.7.7.490.442
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.442
2b5j3ACGag-Pol polyprotein2.7.7.490.441
3ar5TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.441
3fl8RARDihydrofolate reductase/0.441
4hurACOVirginiamycin A acetyltransferase2.3.10.441
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
3c6uM22Gag-Pol polyprotein2.7.7.490.440
3slkNDPPolyketide synthase extender module 2/0.440
4iaq2GM5-hydroxytryptamine receptor 1B/0.440
4j6bPLOCytochrome P450 monooxygenase/0.440