1.850 Å
X-ray
2013-04-26
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_HV1B1 |
| AC: | P03366 |
| Organism: | Human immunodeficiency virus type 1 group M subtype B |
| Reign: | Viruses |
| TaxID: | 11678 |
| EC Number: | 2.7.7.49 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 88 % |
| B | 12 % |
| B-Factor: | 35.581 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.065 | 411.750 |
| % Hydrophobic | % Polar |
|---|---|
| 55.74 | 44.26 |
| According to VolSite | |

| HET Code: | 1QP |
|---|---|
| Formula: | C10H10N2O2 |
| Molecular weight: | 190.199 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 72.73 % |
| Polar Surface area: | 43.6 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 0 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 55.6874 | -19.5606 | 42.7039 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C9 | CG | GLN- 91 | 4.46 | 0 | Hydrophobic |
| C10 | CB | MET- 164 | 3.75 | 0 | Hydrophobic |
| C10 | CB | THR- 165 | 4.3 | 0 | Hydrophobic |
| O1 | N | GLN- 182 | 3.11 | 146.68 | H-Bond (Protein Donor) |
| C9 | CB | GLN- 182 | 3.9 | 0 | Hydrophobic |