1.850 Å
X-ray
2013-04-26
Name: | Gag-Pol polyprotein |
---|---|
ID: | POL_HV1B1 |
AC: | P03366 |
Organism: | Human immunodeficiency virus type 1 group M subtype B |
Reign: | Viruses |
TaxID: | 11678 |
EC Number: | 2.7.7.49 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 88 % |
B | 12 % |
B-Factor: | 35.581 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.065 | 411.750 |
% Hydrophobic | % Polar |
---|---|
55.74 | 44.26 |
According to VolSite |
HET Code: | 1QP |
---|---|
Formula: | C10H10N2O2 |
Molecular weight: | 190.199 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 72.73 % |
Polar Surface area: | 43.6 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
55.6874 | -19.5606 | 42.7039 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CG | GLN- 91 | 4.46 | 0 | Hydrophobic |
C10 | CB | MET- 164 | 3.75 | 0 | Hydrophobic |
C10 | CB | THR- 165 | 4.3 | 0 | Hydrophobic |
O1 | N | GLN- 182 | 3.11 | 146.68 | H-Bond (Protein Donor) |
C9 | CB | GLN- 182 | 3.9 | 0 | Hydrophobic |