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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2yvfFADFerredoxin reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2yvfFADFerredoxin reductase/1.000
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.761
1f3pFADFerredoxin reductase/0.595
4burFADApoptosis-inducing factor 1, mitochondrial1.1.10.518
1q1wFADPutidaredoxin reductase1.18.1.50.486
3imeBZ2Pantothenate synthetase6.3.2.10.478
1rdwLARActin, alpha skeletal muscle/0.466
3uwqU5POrotidine 5'-phosphate decarboxylase/0.463
4yaoFMNNADPH--cytochrome P450 reductase/0.458
4b1vLABActin, alpha skeletal muscle/0.457
3mx2TTPNucleoprotein/0.456
3iocA5DPantothenate synthetase6.3.2.10.455
3ivxFG6Pantothenate synthetase6.3.2.10.453
3fg2FADPutative rubredoxin reductase/0.452
2x3fAPCPantothenate synthetase/0.449
5hg0SAMPantothenate synthetase/0.449
1lolXMPOrotidine 5'-phosphate decarboxylase4.1.1.230.446
2v52LABActin, alpha skeletal muscle/0.444
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.10.443
3ag6PAJPantothenate synthetase/0.443
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4b1uLABActin, alpha skeletal muscle/0.442
3imgBZ2Pantothenate synthetase6.3.2.10.441