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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2x9dITCTetracycline repressor protein class D

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2x9dITCTetracycline repressor protein class D/1.000
2vkeTACTetracycline repressor protein class D/0.585
4auxXTCTetracycline repressor protein class D/0.556
4b1rITCTetracycline repressor protein class D/0.551
5fkmTDCTetracycline repressor protein class D/0.545
2fj1CTCTetracycline repressor protein class D/0.532
2xpuTDCTetracycline repressor protein class D/0.531
4b3aTACTetracycline repressor protein class D/0.526
2xb5I7TTetracycline repressor protein class D/0.525
2o7oDXTTetracycline repressor protein class D/0.513
5fklTDCTetracycline repressor protein class D/0.513
2xpvMIYTetracycline repressor protein class D/0.510
4v2gITCTetracycline repressor protein class D/0.510
2x6o2TCTetracycline repressor protein class D/0.486
2trtTACTetracycline repressor protein class D/0.480
2xpwOTCTetracycline repressor protein class D/0.475
1orkATCTetracycline repressor protein class D/0.474
5fkoTDCTetracycline repressor protein class D/0.471
4d7mTDCTetracycline repressor protein class D/0.470
2uxoTACHTH-type transcriptional regulator TtgR/0.460
2tctCTCTetracycline repressor protein class D/0.456
2vprTDCTetracycline repressor protein class H/0.448