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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2uuoLK3UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2uuoLK3UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.91.000
2xpc051UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.649
2vtdLKMUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.636
2jfhLK1UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.617
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.613
2y66N04UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.600
1uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.580
2uupLK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.579
2y67N21UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.573
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.536
2jfgUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.507
3h3t16HCollagen type IV alpha-3-binding protein/0.477
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.472
4jyzATPGlutamine--tRNA ligase6.1.1.180.463
1gtrATPGlutamine--tRNA ligase6.1.1.180.462
1xuzMMNCapsule biosynthesis protein/0.461
5fd8A5APutative carboxypeptidase yocD/0.461
3iqiASN_GLU_ASN_ILECysteine synthase2.5.1.470.460
1rftPXMPyridoxal kinase2.7.1.350.458
1lkeDOGBilin-binding protein/0.457
2rdn1PL1-deoxypentalenic acid 11-beta-hydroxylase1.14.11.350.457
4j8tDOGUncharacterized PhzA/B-like protein PA3332/0.457
3cmfPDN3-oxo-5-beta-steroid 4-dehydrogenase/0.456
3p8iFMNPentaerythritol tetranitrate reductase/0.456
1m13HYFNuclear receptor subfamily 1 group I member 2/0.455
3gwfNAPCyclohexanone monooxygenase/0.455
2c6c24IGlutamate carboxypeptidase 23.4.17.210.454
3gf4UPGUDP-galactopyranose mutase5.4.99.90.454
3h3r14HCollagen type IV alpha-3-binding protein/0.452
3mj4URMUDP-galactopyranose mutase/0.449
5stdUNNScytalone dehydratase4.2.1.940.448
2wqpWQPPolysialic acid capsule biosynthesis protein SiaC/0.447
3ekuCY9Actin-5C/0.447
1culFOKAdenylate cyclase type 2/0.446
1culFOKAdenylate cyclase type 5/0.446
2gv8NDPThiol-specific monooxygenase1.14.130.446
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.446
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.445
4dbc3QPAspartate aminotransferase2.6.1.10.445
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.444
2wzySQXSoluble acetylcholine receptor/0.444
3hdqGDUUDP-galactopyranose mutase/0.444
3v0p4GWHisto-blood group ABO system transferase/0.444
3bl7DD1m7GpppX diphosphatase3.6.1.590.443
4b63NAPL-ornithine N(5)-monooxygenase/0.443
1akcPPEAspartate aminotransferase, mitochondrial2.6.1.10.442
1qoqIGPTryptophan synthase alpha chain/0.442
1x1dSAHC-20 methyltransferase/0.442
4fm80UQBeta-secretase 13.4.23.460.442
4j0v1H7Beta-secretase 13.4.23.460.442
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.441
3eksCY9Actin-5C/0.441
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.441
4jlj1NMDeoxycytidine kinase2.7.1.740.441
4kbyC2EStimulator of interferon genes protein/0.441
3hl0NADMaleylacetate reductase/0.440
3nmpPYVAbscisic acid receptor PYL2/0.440
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.440
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.440