2.200 Å
X-ray
2004-10-26
| Name: | Capsule biosynthesis protein |
|---|---|
| ID: | Q57265_NEIME |
| AC: | Q57265 |
| Organism: | Neisseria meningitidis |
| Reign: | Bacteria |
| TaxID: | 487 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 12.612 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.753 | 621.000 |
| % Hydrophobic | % Polar |
|---|---|
| 50.54 | 49.46 |
| According to VolSite | |

| HET Code: | MMN |
|---|---|
| Formula: | C8H20NO6 |
| Molecular weight: | 226.248 g/mol |
| DrugBank ID: | DB02787 |
| Buried Surface Area: | 61.64 % |
| Polar Surface area: | 137.99 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 7 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 95.1717 | -24.4505 | 50.5903 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5 | CD1 | ILE- 28 | 4.14 | 0 | Hydrophobic |
| O3 | NE2 | GLN- 55 | 2.93 | 166.68 | H-Bond (Protein Donor) |
| O5 | ND2 | ASN- 74 | 3.14 | 156.08 | H-Bond (Protein Donor) |
| O6 | OD1 | ASN- 74 | 3.24 | 162.73 | H-Bond (Ligand Donor) |
| C6 | CD1 | ILE- 79 | 3.79 | 0 | Hydrophobic |
| C6 | CE | MET- 83 | 3.98 | 0 | Hydrophobic |
| C8 | CE | MET- 157 | 4.34 | 0 | Hydrophobic |
| N1 | OH | TYR- 186 | 2.96 | 165.01 | H-Bond (Ligand Donor) |
| O1 | OH | TYR- 186 | 2.86 | 150.84 | H-Bond (Protein Donor) |
| C3 | CZ | TYR- 186 | 4.07 | 0 | Hydrophobic |
| O3 | OD2 | ASP- 247 | 2.68 | 158.24 | H-Bond (Ligand Donor) |
| O5 | OD1 | ASP- 247 | 2.76 | 149.36 | H-Bond (Ligand Donor) |
| O1 | MN | MN- 1001 | 2.55 | 0 | Metal Acceptor |