2.200 Å
X-ray
2004-10-26
Name: | Capsule biosynthesis protein |
---|---|
ID: | Q57265_NEIME |
AC: | Q57265 |
Organism: | Neisseria meningitidis |
Reign: | Bacteria |
TaxID: | 487 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 12.612 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MN |
Ligandability | Volume (Å3) |
---|---|
0.753 | 621.000 |
% Hydrophobic | % Polar |
---|---|
50.54 | 49.46 |
According to VolSite |
HET Code: | MMN |
---|---|
Formula: | C8H20NO6 |
Molecular weight: | 226.248 g/mol |
DrugBank ID: | DB02787 |
Buried Surface Area: | 61.64 % |
Polar Surface area: | 137.99 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 7 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
95.1717 | -24.4505 | 50.5903 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CD1 | ILE- 28 | 4.14 | 0 | Hydrophobic |
O3 | NE2 | GLN- 55 | 2.93 | 166.68 | H-Bond (Protein Donor) |
O5 | ND2 | ASN- 74 | 3.14 | 156.08 | H-Bond (Protein Donor) |
O6 | OD1 | ASN- 74 | 3.24 | 162.73 | H-Bond (Ligand Donor) |
C6 | CD1 | ILE- 79 | 3.79 | 0 | Hydrophobic |
C6 | CE | MET- 83 | 3.98 | 0 | Hydrophobic |
C8 | CE | MET- 157 | 4.34 | 0 | Hydrophobic |
N1 | OH | TYR- 186 | 2.96 | 165.01 | H-Bond (Ligand Donor) |
O1 | OH | TYR- 186 | 2.86 | 150.84 | H-Bond (Protein Donor) |
C3 | CZ | TYR- 186 | 4.07 | 0 | Hydrophobic |
O3 | OD2 | ASP- 247 | 2.68 | 158.24 | H-Bond (Ligand Donor) |
O5 | OD1 | ASP- 247 | 2.76 | 149.36 | H-Bond (Ligand Donor) |
O1 | MN | MN- 1001 | 2.55 | 0 | Metal Acceptor |