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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2r9rNAPVoltage-gated potassium channel subunit beta-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2r9rNAPVoltage-gated potassium channel subunit beta-2/1.000
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.602
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.601
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.567
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.558
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.547
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.530
1lqaNDPProtein tas/0.526
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.516
1az2NAPAldose reductase1.1.1.210.490
3v36NAPAldose reductase1.1.1.210.482
2iq0NAPAldose reductase1.1.1.210.474
1pz1NAPGeneral stress protein 69/0.466
2pevNDPAldose reductase1.1.1.210.464
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.460
3q67NAPAldose reductase1.1.1.210.459
1ah4NAPAldose reductase1.1.1.210.458
1x96NAPAldose reductase1.1.1.210.458
4pmjNAPPutative oxidoreductase/0.457
1og6NAPOxidoreductase YdhF10.456
2j8tNAPAldose reductase1.1.1.210.455
3q65NAPAldose reductase1.1.1.210.454
3o3rNAPAldose reductase-related protein 11.1.1.210.453
2acuNAPAldose reductase1.1.1.210.452
4g5dNDPProstaglandin F synthase1.1.1.1880.452
1zgdNAPChalcone reductase/0.451
2pf8NDPAldose reductase1.1.1.210.451
2acqNAPAldose reductase1.1.1.210.450
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.450
2pfhNDPAldose reductase1.1.1.210.443
3h7rNAPAldo-keto reductase family 4 member C8/0.443
2acsNAPAldose reductase1.1.1.210.442
3buvNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.441