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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ibyCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ibyCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.91.000
2ibwCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.667
2ibuCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.617
1wl4COAAcetyl-CoA acetyltransferase, cytosolic2.3.1.90.488
4c2jCOA3-ketoacyl-CoA thiolase, mitochondrial2.3.1.160.472
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.461
2j3qTFLAcetylcholinesterase3.1.1.70.458
3pqbVGPPutative oxidoreductase/0.456
1y0s331Peroxisome proliferator-activated receptor delta/0.454
2x7hPFNProstaglandin reductase 310.454
1h2bNAJNAD-dependent alcohol dehydrogenase/0.453
2xupTZ5Acetylcholinesterase3.1.1.70.453
1culFOKAdenylate cyclase type 2/0.451
1culFOKAdenylate cyclase type 5/0.451
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.449
2ywlFADThioredoxin reductase related protein/0.449
1ozpACOMycothiol acetyltransferase2.3.1.1890.448
1ygkRRCPyridoxal kinase2.7.1.350.447
3gwfFADCyclohexanone monooxygenase/0.447
3bl7DD1m7GpppX diphosphatase3.6.1.590.446
3w0hW12Vitamin D3 receptor/0.446
4kqqVPPPeptidoglycan D,D-transpeptidase FtsI/0.445
1qiqACCIsopenicillin N synthase1.21.3.10.444
4geb0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.444
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
3oqkS52Renin3.4.23.150.443
4epq0RRPoly(ADP-ribose) glycohydrolase/0.443
4ge70K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.443
4rujVDXVitamin D3 receptor A/0.443
1txiTX5Vitamin D3 receptor/0.442
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.442
3w5p4OAVitamin D3 receptor/0.442
1drhNAPDihydrofolate reductase1.5.1.30.441
1rx1NAPDihydrofolate reductase1.5.1.30.441
2npiATPmRNA cleavage and polyadenylation factor CLP1/0.441
3gw9VNILanosterol 14-alpha-demethylase/0.441
4g3jVNTLanosterol 14-alpha-demethylase/0.441
4itfTFYVitamin D3 receptor/0.441
2gjlFMNNitronate monooxygenase1.13.12.160.440
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3qlrNDPDihydrofolate reductase1.5.1.30.440
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.440
4nmdFDABifunctional protein PutA/0.440
4r81FMNPredicted NADH dehydrogenase/0.440