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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gqwFADFerredoxin reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gqwFADFerredoxin reductase/1.000
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.917
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.684
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.678
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.675
2gr3FADFerredoxin reductase/0.674
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.653
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.613
4h4wFADBiphenyl dioxygenase ferredoxin reductase subunit/0.588
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.570
2gr0FADFerredoxin reductase/0.561
2gr1FADFerredoxin reductase/0.538
4h4yFADBiphenyl dioxygenase ferredoxin reductase subunit/0.506
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.496
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.490
4emjFADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.480
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.10.476
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.473
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.469
2yvjFADFerredoxin reductase/0.468
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.464
1d7yFADFerredoxin reductase/0.462
1f3pFADFerredoxin reductase/0.460
4liiFADApoptosis-inducing factor 1, mitochondrial1.1.10.440