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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fvc888Polyprotein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fvc888Polyprotein/1.000
3co93MSGenome polyprotein2.7.7.480.649
3u4o08EGenome polyprotein2.7.7.480.641
3u4r08FGenome polyprotein2.7.7.480.640
3tyvHI3Genome polyprotein2.7.7.480.639
4ih71ERGenome polyprotein2.7.7.480.634
3e51N35Genome polyprotein2.7.7.480.633
3cwj321Genome polyprotein2.7.7.480.630
2giqNN2Genome polyprotein2.7.7.480.621
4iz02BIGenome polyprotein2.7.7.480.621
3uph0C1Genome polyprotein2.7.7.480.620
2gc8885Polyprotein/0.616
3d5m4MSGenome polyprotein2.7.7.480.613
3gynB42Genome polyprotein2.7.7.480.612
3h5uH5UGenome polyprotein2.7.7.480.610
3ska053Genome polyprotein2.7.7.480.610
4ih61EPGenome polyprotein2.7.7.480.608
3br9DEYGenome polyprotein2.7.7.480.607
3g86T18Genome polyprotein2.7.7.480.607
3d28B34Genome polyprotein2.7.7.480.602
4mkb28VGenome polyprotein2.7.7.480.599
4mk728OGenome polyprotein2.7.7.480.597
3bsa1PDGenome polyprotein2.7.7.480.593
3h5sH5SGenome polyprotein2.7.7.480.592
3upi0C2Genome polyprotein2.7.7.480.591
3cdeN3HGenome polyprotein2.7.7.480.590
3golXNDGenome polyprotein2.7.7.480.590
2yoj8Y6Genome polyprotein2.7.7.480.587
3hkyIX6Genome polyprotein2.7.7.480.587
3bsc2PDGenome polyprotein2.7.7.480.586
3h2lYAKGenome polyprotein2.7.7.480.583
1z4uPH9Polyprotein/0.578
3csoXNIGenome polyprotein2.7.7.480.572
3cvkN34Genome polyprotein2.7.7.480.572
4mka2AYGenome polyprotein2.7.7.480.571
3gnwXNCGenome polyprotein2.7.7.480.570
3h98B5PGenome polyprotein2.7.7.480.566
4mk828QGenome polyprotein2.7.7.480.566
4eaw0NQGenome polyprotein2.7.7.480.565
3h59H59Genome polyprotein2.7.7.480.564
3gnvXNZGenome polyprotein2.7.7.480.562
3igvB80Genome polyprotein2.7.7.480.557
4mk928RGenome polyprotein2.7.7.480.557
1yvfPH7Polyprotein/0.555
3ske054Genome polyprotein2.7.7.480.548
3hkwIX6Genome polyprotein2.7.7.480.491
2qe5617Polyprotein/0.486
3fqk79ZGenome polyprotein2.7.7.480.480
4ohwATPProtein clpf-1/0.459
2xlrFADPutative flavin-containing monooxygenase/0.450
2c20NADUDP-glucose 4-epimerase/0.442
2a5hSAML-lysine 2,3-aminomutase5.4.3.20.441
2gjlFMNNitronate monooxygenase1.13.12.160.440