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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fjdSFDAdenylylsulfate reductase, subunit A (AprA)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fjdSFDAdenylylsulfate reductase, subunit A (AprA)/1.000
2fjbSFDAdenylylsulfate reductase, subunit A (AprA)/0.827
2fjaFADAdenylylsulfate reductase, subunit A (AprA)/0.615
1jnzFADAdenylylsulfate reductase, subunit A (AprA)/0.592
1jnrFADAdenylylsulfate reductase, subunit A (AprA)/0.585
2xlrFADPutative flavin-containing monooxygenase/0.481
3bg7FADPyranose 2-oxidase/0.473
2bacFADPutative aminooxidase/0.472
3q44D50M1 family aminopeptidase3.4.110.468
1v0jFADUDP-galactopyranose mutase5.4.99.90.466
1knrFADL-aspartate oxidase1.4.3.160.465
1ps9MDE2,4-dienoyl-CoA reductase1.3.1.340.459
1h50FMNPentaerythritol tetranitrate reductase/0.456
1qo8FADFumarate reductase flavoprotein subunit/0.456
4at0FADPossible succinate dehydrogenase/0.456
5dcyNAPIridoid synthase1.3.1.990.456
2ignFADPyranose 2-oxidase/0.454
1qorNDPQuinone oxidoreductase 1/0.453
3kybFADUDP-galactopyranose mutase5.4.99.90.451
2geuCOKPantothenate kinase2.7.1.330.447
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.446
3jynNDPQuinone oxidoreductase/0.445
2ftoCB3Thymidylate synthase/0.444
2rghFADAlpha-Glycerophosphate Oxidase/0.444
2xytTC9Soluble acetylcholine receptor/0.444
2bi7FADUDP-galactopyranose mutase5.4.99.90.443
4jbiNDPAlcohol dehydrogenase (Zinc)/0.443
5dbfNDPIridoid synthase1.3.1.990.443
5dp2NAPCurF/0.443
1knpFADL-aspartate oxidase1.4.3.160.442
4c4oNADSADH/0.442
5a3cNADSIR2 family protein/0.442
5dbgNADIridoid synthase1.3.1.990.442
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.441
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.441
1cf3FADGlucose oxidase1.1.3.40.440