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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fjbSFDAdenylylsulfate reductase, subunit A (AprA)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fjbSFDAdenylylsulfate reductase, subunit A (AprA)/1.000
2fjdSFDAdenylylsulfate reductase, subunit A (AprA)/0.719
1cf3FADGlucose oxidase1.1.3.40.498
2ignFADPyranose 2-oxidase/0.493
3vqrFADPutative oxidoreductase/0.493
3bg7FADPyranose 2-oxidase/0.483
2fjaFADAdenylylsulfate reductase, subunit A (AprA)/0.482
2igoFADPyranose 2-oxidase/0.479
5c3jFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.475
1jnzFADAdenylylsulfate reductase, subunit A (AprA)/0.470
3ctyFADProbable thioredoxin reductase/0.466
4udqFAD5-(hydroxymethyl)furfural oxidase/0.465
2bi7FADUDP-galactopyranose mutase5.4.99.90.464
1galFADGlucose oxidase1.1.3.40.462
4udrFAD5-(hydroxymethyl)furfural oxidase/0.462
1jnrFADAdenylylsulfate reductase, subunit A (AprA)/0.461
3kveFADL-amino-acid oxidase/0.461
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.460
2ywlFADThioredoxin reductase related protein/0.460
5c2tFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.460
4ytnFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.458
1kf6FADFumarate reductase flavoprotein subunit1.3.5.40.457
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.456
4kx6FADFumarate reductase flavoprotein subunit1.3.5.40.456
1qo8FADFumarate reductase flavoprotein subunit/0.455
2babFADPutative aminooxidase/0.455
1e1lFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.451
5hxwFADL-amino acid deaminase/0.451
4qi5FADCellobiose dehydrogenase/0.449
4yshFADGlycine oxidase/0.448
1knrFADL-aspartate oxidase1.4.3.160.447
1n4uFAECholesterol oxidase1.1.3.60.447
1d4cFADFumarate reductase flavoprotein subunit1.3.5.40.446
3cndFADPolyamine oxidase FMS1/0.446
3k4nFADPyranose 2-oxidase/0.446
4echFADPolyamine oxidase FMS1/0.446
2bacFADPutative aminooxidase/0.445
4qi7FADCellobiose dehydrogenase/0.445
3cntFADPolyamine oxidase FMS1/0.444
5l3dFADLysine-specific histone demethylase 1A10.444
3axbFADPutative oxidoreductase/0.443
5hsaFASAlcohol oxidase 11.1.3.130.443
2rgoFADAlpha-Glycerophosphate Oxidase/0.442
4u2sFDACholesterol oxidase1.1.3.60.442
3intFDAUDP-galactopyranose mutase5.4.99.90.441
4qi4FADCellobiose dehydrogenase/0.441
4z26FADPutative GMC-type oxidoreductase R13510.441
1mxtFAECholesterol oxidase1.1.3.60.440
2c7gFADNADPH-ferredoxin reductase FprA1.18.1.20.440
2yr4FADPhenylalanine 2-monooxygenase precursor1.13.12.90.440
4at0FADPossible succinate dehydrogenase/0.440