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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2chtTSAChorismate mutase AroH5.4.99.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2chtTSAChorismate mutase AroH5.4.99.51.000
3zp4TSAChorismate mutase AroH5.4.99.50.552
1comPREChorismate mutase AroH5.4.99.50.542
3pxvFMNNitroreductase/0.465
4itmATPTetraacyldisaccharide 4'-kinase/0.456
1yw8A75Methionine aminopeptidase 2/0.453
3gwfNAPCyclohexanone monooxygenase/0.451
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
1nzdUPGDNA beta-glucosyltransferase/0.449
1u1gBBBUridine phosphorylase2.4.2.30.449
1u1cBAUUridine phosphorylase2.4.2.30.445
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.443
1fm4DXCMajor pollen allergen Bet v 1-L/0.442
3h3sH15Collagen type IV alpha-3-binding protein/0.440
4xr9NADCalS8/0.440