2.200 Å
X-ray
2013-01-18
Name: | Tetraacyldisaccharide 4'-kinase |
---|---|
ID: | LPXK_AQUAE |
AC: | O67572 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.636 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.078 | 1096.875 |
% Hydrophobic | % Polar |
---|---|
46.77 | 53.23 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 59.69 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
3.06106 | -1.31748 | 0.372516 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | GLY- 50 | 2.94 | 151.9 | H-Bond (Protein Donor) |
O2G | N | THR- 52 | 2.76 | 153.32 | H-Bond (Protein Donor) |
C2' | CB | THR- 52 | 4.15 | 0 | Hydrophobic |
N7 | OG | SER- 53 | 2.63 | 147.13 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 103 | 4.33 | 0 | Hydrophobic |
O1B | OH | TYR- 187 | 2.54 | 158.06 | H-Bond (Protein Donor) |
O2A | NH1 | ARG- 206 | 3.02 | 158.42 | H-Bond (Protein Donor) |
O1A | NE2 | GLN- 240 | 2.96 | 157.08 | H-Bond (Protein Donor) |
C1' | CG | PRO- 279 | 4.19 | 0 | Hydrophobic |
N6 | O | PHE- 296 | 2.74 | 170.41 | H-Bond (Ligand Donor) |
N1 | N | PHE- 296 | 2.99 | 161.16 | H-Bond (Protein Donor) |
O1G | O | HOH- 529 | 2.53 | 156.5 | H-Bond (Protein Donor) |