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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2a84ATPPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2a84ATPPantothenate synthetase6.3.2.11.000
1n2gAPCPantothenate synthetase6.3.2.10.531
3iocA5DPantothenate synthetase6.3.2.10.515
3isjA8DPantothenate synthetase6.3.2.10.514
3ivcFG4Pantothenate synthetase6.3.2.10.500
1n2eAPCPantothenate synthetase6.3.2.10.499
3imeBZ2Pantothenate synthetase6.3.2.10.496
4ddhMS0Pantothenate synthetase6.3.2.10.494
3iobA4DPantothenate synthetase6.3.2.10.485
5kwvANPPantothenate synthetase/0.485
3iodA6DPantothenate synthetase6.3.2.10.483
3coy53HPantothenate synthetase6.3.2.10.461
2x3fAPCPantothenate synthetase/0.457
1xddAAYIntegrin alpha-L/0.453
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.450
5hg0SAMPantothenate synthetase/0.450
1n2hPAJPantothenate synthetase6.3.2.10.441