sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1rx3 | MTX | Dihydrofolate reductase | 1.5.1.3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1rx3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 1.000 | |
| 4p66 | MTX | Dihydrofolate reductase | / | 0.599 | |
| 3cse | N22 | Uncharacterized protein | / | 0.593 | |
| 1vj3 | TAB | Dihydrofolate reductase | 1.5.1.3 | 0.584 | |
| 1dg5 | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.579 | |
| 3ia4 | MTX | Dihydrofolate reductase | / | 0.579 | |
| 1rb3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.578 | |
| 2w3v | TOP | Dihydrofolate reductase | / | 0.578 | |
| 2zza | FOL | Dihydrofolate reductase | / | 0.577 | |
| 1dds | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.576 | |
| 3td8 | D2R | Dihydrofolate reductase | 1.5.1.3 | 0.575 | |
| 3qls | 55V | Dihydrofolate reductase | 1.5.1.3 | 0.574 | |
| 3kjs | DQ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.573 | |
| 4h96 | 14Q | Dihydrofolate reductase | 1.5.1.3 | 0.573 | |
| 4h98 | 14Q | Uncharacterized protein | / | 0.571 | |
| 1tdr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.568 | |
| 4x5g | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.568 | |
| 4nx6 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.565 | |
| 1cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.564 | |
| 1j3i | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.564 | |
| 1klk | PMD | Dihydrofolate reductase | 1.5.1.3 | 0.564 | |
| 1m7a | MQU | Dihydrofolate reductase | 1.5.1.3 | 0.564 | |
| 3qlr | QLR | Dihydrofolate reductase | 1.5.1.3 | 0.563 | |
| 2cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.562 | |
| 2fzi | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.560 | |
| 3inv | C50 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.559 | |
| 3sa1 | 6DR | Dihydrofolate reductase | / | 0.559 | |
| 3qlz | QLZ | Uncharacterized protein | / | 0.558 | |
| 1ddr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.557 | |
| 2drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.557 | |
| 3drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.557 | |
| 3fre | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.555 | |
| 4fgg | 0U5 | Dihydrofolate reductase | 1.5.1.3 | 0.554 | |
| 3qlw | N22 | Dihydrofolate reductase | 1.5.1.3 | 0.553 | |
| 3dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.550 | |
| 3dga | RJ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.550 | |
| 4x5f | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.550 | |
| 1aoe | GW3 | Dihydrofolate reductase | 1.5.1.3 | 0.549 | |
| 1daj | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.549 | |
| 1re7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.549 | |
| 1df7 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.548 | |
| 3eek | 53S | Uncharacterized protein | / | 0.548 | |
| 4nx7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.548 | |
| 4m2x | TMQ | Dihydrofolate reductase | 1.5.1.3 | 0.546 | |
| 3qly | 55V | Uncharacterized protein | / | 0.545 | |
| 3um6 | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.545 | |
| 4dph | P65 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.545 | |
| 3eem | 53V | Uncharacterized protein | / | 0.543 | |
| 3tq9 | MTX | Dihydrofolate reductase | / | 0.543 | |
| 3eel | 53T | Uncharacterized protein | / | 0.542 | |
| 4h95 | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.542 | |
| 4ixe | IXE | Dihydrofolate reductase | 1.5.1.3 | 0.542 | |
| 1dra | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.541 | |
| 3qlx | QLR | Uncharacterized protein | / | 0.541 | |
| 3sa2 | 7DR | Dihydrofolate reductase | / | 0.541 | |
| 4xe6 | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.541 | |
| 4cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.539 | |
| 3sh2 | 5DR | Dihydrofolate reductase | 1.5.1.3 | 0.538 | |
| 4h97 | 53S | Dihydrofolate reductase | 1.5.1.3 | 0.535 | |
| 1m78 | CLZ | Dihydrofolate reductase | 1.5.1.3 | 0.532 | |
| 3och | 2MX | Dihydrofolate reductase | 1.5.1.3 | 0.532 | |
| 1j3k | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.531 | |
| 3srq | Q19 | Dihydrofolate reductase | 1.5.1.3 | 0.531 | |
| 3iro | 2CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.529 | |
| 3jwc | EKB | Dihydrofolate reductase | / | 0.529 | |
| 2fzh | DH1 | Dihydrofolate reductase | 1.5.1.3 | 0.528 | |
| 3fyw | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.528 | |
| 4dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.524 | |
| 3eej | 53R | Uncharacterized protein | / | 0.522 | |
| 4ixf | IXF | Dihydrofolate reductase | 1.5.1.3 | 0.522 | |
| 3jwm | 5WB | Dihydrofolate reductase | / | 0.521 | |
| 3qfx | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.521 | |
| 3qg2 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.520 | |
| 3jw5 | TOP | Dihydrofolate reductase | / | 0.519 | |
| 1ly3 | COG | Dihydrofolate reductase | 1.5.1.3 | 0.518 | |
| 3jsu | KA5 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.518 | |
| 1dyj | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.517 | |
| 3cd2 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.517 | |
| 3dau | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.517 | |
| 3frd | DHF | Dihydrofolate reductase | 1.5.1.3 | 0.515 | |
| 4dp3 | MMV | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.515 | |
| 1rc4 | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.513 | |
| 1rd7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.513 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.512 | |
| 1jol | FFO | Dihydrofolate reductase | 1.5.1.3 | 0.512 | |
| 5hi6 | MTX | Dihydrofolate reductase | / | 0.511 | |
| 1dhj | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.510 | |
| 3sai | 9DR | Dihydrofolate reductase | / | 0.510 | |
| 1e26 | GPB | Dihydrofolate reductase | 1.5.1.3 | 0.509 | |
| 4ele | 31I | Dihydrofolate reductase | / | 0.509 | |
| 1drb | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.507 | |
| 3fy9 | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.507 | |
| 4elb | 34S | Dihydrofolate reductase | / | 0.507 | |
| 3fl8 | RAR | Dihydrofolate reductase | / | 0.506 | |
| 3sru | Q26 | Dihydrofolate reductase | 1.5.1.3 | 0.503 | |
| 1dg7 | WRB | Dihydrofolate reductase | 1.5.1.3 | 0.502 | |
| 3tqb | FOL | Dihydrofolate reductase | / | 0.499 | |
| 7dfr | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.499 | |
| 1hfp | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.498 | |
| 2blc | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.498 | |
| 3frf | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.498 | |
| 1rf7 | DHF | Dihydrofolate reductase | 1.5.1.3 | 0.497 | |
| 2w3w | VG9 | Dihydrofolate reductase | / | 0.496 | |
| 4fgh | 0U6 | Dihydrofolate reductase | 1.5.1.3 | 0.496 | |
| 1ia1 | TQ3 | Dihydrofolate reductase | 1.5.1.3 | 0.493 | |
| 3clb | TMQ | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.493 | |
| 4g8z | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.493 | |
| 4elg | 52J | Dihydrofolate reductase | / | 0.492 | |
| 3dat | MTX | Dihydrofolate reductase | / | 0.489 | |
| 4elb | 34R | Dihydrofolate reductase | / | 0.489 | |
| 3ql3 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.488 | |
| 4kjj | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.488 | |
| 2qk8 | MTX | Dihydrofolate reductase | / | 0.487 | |
| 3fyv | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.487 | |
| 3sgy | 06W | Dihydrofolate reductase | 1.5.1.3 | 0.487 | |
| 3qgt | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.484 | |
| 3irn | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.482 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.481 | |
| 1rb2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.480 | |
| 3eig | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 3fy8 | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 4x5j | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 1rg7 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.478 | |
| 2bla | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.478 | |
| 2w9s | TOP | Dihydrofolate reductase type 1 from Tn4003 | 1.5.1.3 | 0.478 | |
| 3m08 | RAR | Dihydrofolate reductase | 1.5.1.3 | 0.478 | |
| 3i8a | N22 | Dihydrofolate reductase | 1.5.1.3 | 0.476 | |
| 4ixg | IXG | Dihydrofolate reductase | 1.5.1.3 | 0.476 | |
| 3ix9 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.474 | |
| 1j3j | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.472 | |
| 2blb | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.472 | |
| 3srw | Q27 | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
| 4ej1 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.470 | |
| 3srs | M23 | Dihydrofolate reductase | 1.5.1.3 | 0.469 | |
| 3fra | I2H | Dihydrofolate reductase | 1.5.1.3 | 0.468 | |
| 4x5i | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.467 | |
| 4m7v | RAR | Dihydrofolate reductase | / | 0.466 | |
| 5ccc | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.466 | |
| 1ia4 | TQ6 | Dihydrofolate reductase | 1.5.1.3 | 0.462 | |
| 2w9g | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.462 | |
| 1s3y | TQT | Dihydrofolate reductase | 1.5.1.3 | 0.461 | |
| 1diu | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 3k47 | D09 | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 4m6l | 21V | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 3srr | Q20 | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 3dg8 | RJ6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.453 | |
| 3r33 | 6ME | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 4eil | FOL | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.453 | |
| 4kak | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 3l3r | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 3tq8 | TOP | Dihydrofolate reductase | / | 0.451 | |
| 4qi9 | MTX | Dihydrofolate reductase | / | 0.450 | |
| 2hw2 | RFP | Rifampin ADP-ribosyl transferase | / | 0.448 | |
| 3cv9 | VDX | Vitamin D3 dihydroxylase | / | 0.447 | |
| 3sqy | Q11 | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 1dis | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1ly4 | COQ | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1jom | FFO | Dihydrofolate reductase | 1.5.1.3 | 0.445 | |
| 4dpd | DHF | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.445 | |
| 2has | C3O | Vitamin D3 receptor | / | 0.444 | |
| 4h6p | FMN | Chromate reductase | / | 0.444 | |
| 3rg9 | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.442 | |
| 4elf | 35I | Dihydrofolate reductase | / | 0.442 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.441 | |
| 1guf | NDP | Enoyl-[acyl-carrier-protein] reductase 1, mitochondrial | 1.3.1.10 | 0.440 | |
| 1rx7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 2cig | 1DG | Dihydrofolate reductase | 1.5.1.3 | 0.440 |