Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.131.000
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.604
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.594
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.589
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.587
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.585
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.579
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.578
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.577
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.576
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.574
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.568
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.561
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.561
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.559
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.555
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.554
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.553
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.550
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.543
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.543
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.541
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.540
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.536
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.533
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.527
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.527
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.524
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.523
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.522
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.521
2d2iNAPGlyceraldehyde-3-phosphate dehydrogenase/0.521
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.521
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.515
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.508
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.500
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.496
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.486
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.477
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.472
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.460
4e5yNDPGDP-L-fucose synthase1.1.1.2710.460
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.459
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.459
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.456
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.455
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
3cisATPUniversal stress protein Rv2623/0.447
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
4q73FADBifunctional protein PutA/0.445
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.444
1zmdNAIDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.442
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.442
2npaMMBPeroxisome proliferator-activated receptor alpha/0.440
4ejmNAPPutative zinc-binding dehydrogenase/0.440